Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 DUX4L1-201ENST00000627662 1275 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4L8-201ENST00000629013 1275 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4L3-201ENST00000630187 1275 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4L7-201ENST00000630678 1275 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4L5-201ENST00000630834 1275 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 ANOS2P-203ENST00000472227 1816 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.22■□□□□ 0.83
BEST3Q8N1M1 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 AC068473.5-201ENST00000616428 2072 ntBASIC20.22■□□□□ 0.83
BEST3Q8N1M1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.22■□□□□ 0.83
BEST3Q8N1M1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 CCDC92B-201ENST00000575506 885 ntBASIC20.21■□□□□ 0.83
BEST3Q8N1M1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 AC068587.7-201ENST00000641602 218 ntBASIC20.21■□□□□ 0.83
BEST3Q8N1M1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.21■□□□□ 0.83
BEST3Q8N1M1 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.21■□□□□ 0.83
BEST3Q8N1M1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
BEST3Q8N1M1 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
BEST3Q8N1M1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 AC079834.2-201ENST00000609776 1949 ntBASIC20.2■□□□□ 0.82
BEST3Q8N1M1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 KRT18P5-201ENST00000436075 1291 ntBASIC20.2■□□□□ 0.82
BEST3Q8N1M1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.2■□□□□ 0.82
BEST3Q8N1M1 LINC02228-203ENST00000641970 1355 ntBASIC20.2■□□□□ 0.82
BEST3Q8N1M1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 AC087239.1-201ENST00000622671 572 ntBASIC20.19■□□□□ 0.82
BEST3Q8N1M1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BEST3Q8N1M1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.18■□□□□ 0.82
BEST3Q8N1M1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms