Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 AC010542.4-201ENST00000563151 1910 ntBASIC13.72□□□□□ -0.21
LINC00643Q86TS7 AC018445.3-201ENST00000624177 1945 ntBASIC13.72□□□□□ -0.21
LINC00643Q86TS7 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
LINC00643Q86TS7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 HCG11-201ENST00000411553 5696 ntBASIC13.71□□□□□ -0.21
LINC00643Q86TS7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LINC00643Q86TS7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC13.71□□□□□ -0.22
LINC00643Q86TS7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LINC00643Q86TS7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
LINC00643Q86TS7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 AL158211.5-201ENST00000623583 2518 ntBASIC13.68□□□□□ -0.22
LINC00643Q86TS7 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
LINC00643Q86TS7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms