Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.7■□□□□ 0.74
ZNF404Q494X3 THA1P-201ENST00000590384 1145 ntBASIC19.7■□□□□ 0.74
ZNF404Q494X3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
ZNF404Q494X3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF404Q494X3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.69■□□□□ 0.74
ZNF404Q494X3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
ZNF404Q494X3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.69■□□□□ 0.74
ZNF404Q494X3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
ZNF404Q494X3 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 AC010542.4-201ENST00000563151 1910 ntBASIC19.69■□□□□ 0.74
ZNF404Q494X3 AC120024.1-201ENST00000562672 995 ntBASIC19.69■□□□□ 0.74
ZNF404Q494X3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.69■□□□□ 0.74
ZNF404Q494X3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.69■□□□□ 0.74
ZNF404Q494X3 AC011551.1-201ENST00000614101 683 ntBASIC19.69■□□□□ 0.74
ZNF404Q494X3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZNF404Q494X3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.68■□□□□ 0.74
ZNF404Q494X3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF404Q494X3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF404Q494X3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF404Q494X3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF404Q494X3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ZNF404Q494X3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZNF404Q494X3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF404Q494X3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF404Q494X3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF404Q494X3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.67■□□□□ 0.74
ZNF404Q494X3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF404Q494X3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.67■□□□□ 0.74
ZNF404Q494X3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF404Q494X3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZNF404Q494X3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ZNF404Q494X3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.67■□□□□ 0.74
ZNF404Q494X3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 AC009299.2-201ENST00000482477 511 ntBASIC19.66■□□□□ 0.74
ZNF404Q494X3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.66■□□□□ 0.74
ZNF404Q494X3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
ZNF404Q494X3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ZNF404Q494X3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ZNF404Q494X3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ZNF404Q494X3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 AL035685.1-201ENST00000636663 812 ntBASIC19.65■□□□□ 0.74
ZNF404Q494X3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF404Q494X3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF404Q494X3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.64■□□□□ 0.74
ZNF404Q494X3 LINC01521-201ENST00000504184 1943 ntBASIC19.64■□□□□ 0.74
ZNF404Q494X3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF404Q494X3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF404Q494X3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF404Q494X3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF404Q494X3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
ZNF404Q494X3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ZNF404Q494X3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF404Q494X3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF404Q494X3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF404Q494X3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ZNF404Q494X3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF404Q494X3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF404Q494X3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF404Q494X3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF404Q494X3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.63■□□□□ 0.73
ZNF404Q494X3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms