Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.53■□□□□ 0.4
CX3CL1P78423 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.53■□□□□ 0.4
CX3CL1P78423 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CX3CL1P78423 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.53■□□□□ 0.4
CX3CL1P78423 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
CX3CL1P78423 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CX3CL1P78423 SYT6-210ENST00000641643 1587 ntBASIC17.53■□□□□ 0.4
CX3CL1P78423 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CX3CL1P78423 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.52■□□□□ 0.4
CX3CL1P78423 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CX3CL1P78423 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CX3CL1P78423 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CX3CL1P78423 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CX3CL1P78423 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CX3CL1P78423 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.52■□□□□ 0.4
CX3CL1P78423 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CX3CL1P78423 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.52■□□□□ 0.4
CX3CL1P78423 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CX3CL1P78423 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
CX3CL1P78423 LINC00526-201ENST00000581067 1875 ntBASIC17.52■□□□□ 0.39
CX3CL1P78423 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.52■□□□□ 0.39
CX3CL1P78423 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CX3CL1P78423 AC133637.1-201ENST00000624115 1537 ntBASIC17.52■□□□□ 0.39
CX3CL1P78423 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.52■□□□□ 0.39
CX3CL1P78423 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CX3CL1P78423 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CX3CL1P78423 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CX3CL1P78423 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CX3CL1P78423 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.51■□□□□ 0.39
CX3CL1P78423 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.51■□□□□ 0.39
CX3CL1P78423 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.51■□□□□ 0.39
CX3CL1P78423 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CX3CL1P78423 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CX3CL1P78423 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CX3CL1P78423 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.51■□□□□ 0.39
CX3CL1P78423 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CX3CL1P78423 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 SERBP1P1-201ENST00000396021 1160 ntBASIC17.5■□□□□ 0.39
CX3CL1P78423 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CX3CL1P78423 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.5■□□□□ 0.39
CX3CL1P78423 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.5■□□□□ 0.39
CX3CL1P78423 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.5■□□□□ 0.39
CX3CL1P78423 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CX3CL1P78423 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CX3CL1P78423 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CX3CL1P78423 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CX3CL1P78423 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.49■□□□□ 0.39
CX3CL1P78423 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.49■□□□□ 0.39
CX3CL1P78423 AL138724.1-201ENST00000606771 1088 ntBASIC17.49■□□□□ 0.39
CX3CL1P78423 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.49■□□□□ 0.39
CX3CL1P78423 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CX3CL1P78423 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CX3CL1P78423 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
CX3CL1P78423 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 PKD1P6-201ENST00000343738 4769 ntBASIC17.48■□□□□ 0.39
CX3CL1P78423 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CX3CL1P78423 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.48■□□□□ 0.39
CX3CL1P78423 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CX3CL1P78423 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CX3CL1P78423 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CX3CL1P78423 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.48■□□□□ 0.39
CX3CL1P78423 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.48■□□□□ 0.39
CX3CL1P78423 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.48■□□□□ 0.39
CX3CL1P78423 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CX3CL1P78423 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.47■□□□□ 0.39
CX3CL1P78423 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.47■□□□□ 0.39
CX3CL1P78423 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CX3CL1P78423 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.47■□□□□ 0.39
CX3CL1P78423 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms