Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP006294.2-201ENST00000641667 209 ntBASIC26.31■■□□□ 1.8
SCN4AP35499 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SCN4AP35499 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCN4AP35499 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.31■■□□□ 1.8
SCN4AP35499 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCN4AP35499 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCN4AP35499 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
SCN4AP35499 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.31■■□□□ 1.8
SCN4AP35499 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26.3■■□□□ 1.8
SCN4AP35499 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
SCN4AP35499 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.3■■□□□ 1.8
SCN4AP35499 CYP2T1P-201ENST00000432607 1285 ntBASIC26.3■■□□□ 1.8
SCN4AP35499 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
SCN4AP35499 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCN4AP35499 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.3■■□□□ 1.8
SCN4AP35499 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN4AP35499 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN4AP35499 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN4AP35499 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN4AP35499 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC26.29■■□□□ 1.8
SCN4AP35499 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC26.29■■□□□ 1.8
SCN4AP35499 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCN4AP35499 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC26.29■■□□□ 1.8
SCN4AP35499 AC004687.1-201ENST00000579003 1625 ntBASIC26.28■■□□□ 1.8
SCN4AP35499 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.28■■□□□ 1.8
SCN4AP35499 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.28■■□□□ 1.8
SCN4AP35499 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.28■■□□□ 1.8
SCN4AP35499 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SCN4AP35499 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.28■■□□□ 1.8
SCN4AP35499 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SCN4AP35499 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCN4AP35499 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCN4AP35499 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC26.27■■□□□ 1.8
SCN4AP35499 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCN4AP35499 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCN4AP35499 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC26.27■■□□□ 1.8
SCN4AP35499 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCN4AP35499 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.27■■□□□ 1.8
SCN4AP35499 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.27■■□□□ 1.8
SCN4AP35499 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.27■■□□□ 1.8
SCN4AP35499 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SCN4AP35499 AC010536.3-201ENST00000620306 533 ntBASIC26.27■■□□□ 1.8
SCN4AP35499 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
SCN4AP35499 AC013268.1-206ENST00000638368 961 ntBASIC26.27■■□□□ 1.8
SCN4AP35499 AC112229.1-201ENST00000639295 961 ntBASIC26.27■■□□□ 1.8
SCN4AP35499 MKRN4P-201ENST00000444706 1521 ntBASIC26.27■■□□□ 1.8
SCN4AP35499 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCN4AP35499 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCN4AP35499 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.26■■□□□ 1.8
SCN4AP35499 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCN4AP35499 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SCN4AP35499 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.26■■□□□ 1.79
SCN4AP35499 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SCN4AP35499 AC083880.1-201ENST00000608266 535 ntBASIC26.26■■□□□ 1.79
SCN4AP35499 MFF-207ENST00000409565 1548 ntTSL 2 BASIC26.26■■□□□ 1.79
SCN4AP35499 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC26.26■■□□□ 1.79
SCN4AP35499 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
SCN4AP35499 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SCN4AP35499 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SCN4AP35499 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCN4AP35499 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCN4AP35499 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SCN4AP35499 ASL-203ENST00000380839 1765 ntTSL 5 BASIC26.26■■□□□ 1.79
SCN4AP35499 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.25■■□□□ 1.79
SCN4AP35499 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.25■■□□□ 1.79
SCN4AP35499 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SCN4AP35499 KRT18P20-201ENST00000548986 1279 ntBASIC26.25■■□□□ 1.79
SCN4AP35499 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCN4AP35499 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCN4AP35499 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCN4AP35499 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SCN4AP35499 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SCN4AP35499 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
SCN4AP35499 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC26.24■■□□□ 1.79
SCN4AP35499 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SCN4AP35499 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SCN4AP35499 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.24■■□□□ 1.79
SCN4AP35499 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC26.24■■□□□ 1.79
SCN4AP35499 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.24■■□□□ 1.79
SCN4AP35499 AC009237.3-201ENST00000393279 1427 ntBASIC26.24■■□□□ 1.79
SCN4AP35499 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.23■■□□□ 1.79
SCN4AP35499 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC26.23■■□□□ 1.79
SCN4AP35499 AL596275.1-201ENST00000423464 877 ntBASIC26.23■■□□□ 1.79
SCN4AP35499 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC26.23■■□□□ 1.79
SCN4AP35499 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
SCN4AP35499 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCN4AP35499 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
SCN4AP35499 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SCN4AP35499 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.23■■□□□ 1.79
SCN4AP35499 AC142381.4-202ENST00000563973 229 ntBASIC26.23■■□□□ 1.79
SCN4AP35499 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCN4AP35499 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCN4AP35499 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms