Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 RPS2P35-201ENST00000443417 897 ntBASIC16.03■□□□□ 0.16
CKS2P33552 HES4-204ENST00000484667 667 ntTSL 3 BASIC16.03■□□□□ 0.16
CKS2P33552 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.03■□□□□ 0.16
CKS2P33552 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CKS2P33552 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CKS2P33552 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CKS2P33552 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CKS2P33552 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.02■□□□□ 0.16
CKS2P33552 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CKS2P33552 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CKS2P33552 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.02■□□□□ 0.16
CKS2P33552 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CKS2P33552 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CKS2P33552 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CKS2P33552 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CKS2P33552 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CKS2P33552 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CKS2P33552 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CKS2P33552 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.01■□□□□ 0.15
CKS2P33552 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.01■□□□□ 0.15
CKS2P33552 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.01■□□□□ 0.15
CKS2P33552 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC16.01■□□□□ 0.15
CKS2P33552 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CKS2P33552 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CKS2P33552 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CKS2P33552 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CKS2P33552 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CKS2P33552 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16■□□□□ 0.15
CKS2P33552 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CKS2P33552 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16■□□□□ 0.15
CKS2P33552 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC16■□□□□ 0.15
CKS2P33552 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CKS2P33552 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16■□□□□ 0.15
CKS2P33552 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC16■□□□□ 0.15
CKS2P33552 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CKS2P33552 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CKS2P33552 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CKS2P33552 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16■□□□□ 0.15
CKS2P33552 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CKS2P33552 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC15.99■□□□□ 0.15
CKS2P33552 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC15.99■□□□□ 0.15
CKS2P33552 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC15.99■□□□□ 0.15
CKS2P33552 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC15.99■□□□□ 0.15
CKS2P33552 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CKS2P33552 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CKS2P33552 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC15.99■□□□□ 0.15
CKS2P33552 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
CKS2P33552 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC15.98■□□□□ 0.15
CKS2P33552 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.98■□□□□ 0.15
CKS2P33552 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC15.98■□□□□ 0.15
CKS2P33552 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
CKS2P33552 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
CKS2P33552 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CKS2P33552 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms