Protein–RNA interactions for Protein: P12956

XRCC6, X-ray repair cross-complementing protein 6, humanhuman

Known RBP eCLIP

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC6P12956 KIFC3-235ENST00000623271 2393 nt16.46■□□□□ 0.238e-6■■□□□ 13.6
XRCC6P12956 KIFC3-230ENST00000567204 516 ntTSL 416.07■□□□□ 0.168e-6■■□□□ 13.6
XRCC6P12956 OVOL2-204ENST00000486776 550 ntTSL 316.03■□□□□ 0.162e-10■■□□□ 13.6
XRCC6P12956 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.138e-6■■□□□ 13.6
XRCC6P12956 KIFC3-212ENST00000562984 551 ntTSL 415.6■□□□□ 0.098e-6■■□□□ 13.6
XRCC6P12956 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC15.34■□□□□ 0.058e-6■■□□□ 13.6
XRCC6P12956 KANSL3-210ENST00000451819 693 ntTSL 515.19■□□□□ 0.028e-6■■□□□ 13.6
XRCC6P12956 BRD7-205ENST00000562383 2580 ntTSL 514.83□□□□□ -0.038e-6■■□□□ 13.6
XRCC6P12956 KANSL3-205ENST00000425656 1526 ntTSL 513.95□□□□□ -0.188e-6■■□□□ 13.6
XRCC6P12956 KANSL3-203ENST00000418735 594 ntTSL 413.8□□□□□ -0.28e-6■■□□□ 13.6
XRCC6P12956 KIFC3-220ENST00000565351 297 ntTSL 1 (best)13.71□□□□□ -0.218e-6■■□□□ 13.6
XRCC6P12956 KIFC3-234ENST00000569619 698 ntTSL 313.06□□□□□ -0.328e-6■■□□□ 13.6
XRCC6P12956 KIFC3-222ENST00000565481 788 ntTSL 512.99□□□□□ -0.338e-6■■□□□ 13.6
XRCC6P12956 KANSL3-209ENST00000448075 701 ntTSL 512.47□□□□□ -0.418e-6■■□□□ 13.6
XRCC6P12956 VPS53-202ENST00000389040 1903 ntTSL 1 (best)11.9□□□□□ -0.58e-6■■□□□ 13.6
XRCC6P12956 KANSL3-220ENST00000597150 2811 ntTSL 211.86□□□□□ -0.518e-6■■□□□ 13.6
XRCC6P12956 KANSL3-201ENST00000354204 5253 ntTSL 1 (best)11.09□□□□□ -0.638e-6■■□□□ 13.6
XRCC6P12956 KANSL3-208ENST00000447759 5012 ntTSL 511.09□□□□□ -0.638e-6■■□□□ 13.6
XRCC6P12956 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.658e-6■■□□□ 13.6
XRCC6P12956 SNX5-208ENST00000475716 715 ntTSL 310.94□□□□□ -0.662e-10■■□□□ 13.6
XRCC6P12956 KANSL3-218ENST00000487070 4937 ntTSL 1 (best)10.81□□□□□ -0.688e-6■■□□□ 13.6
XRCC6P12956 EIF4G3-202ENST00000356916 2179 ntTSL 1 (best) BASIC10.79□□□□□ -0.688e-6■■□□□ 13.6
XRCC6P12956 ACTN4-207ENST00000495553 586 ntTSL 510.58□□□□□ -0.728e-6■■□□□ 13.6
XRCC6P12956 KANSL3-204ENST00000420155 5028 ntTSL 1 (best)10.45□□□□□ -0.748e-6■■□□□ 13.6
XRCC6P12956 VPS53-203ENST00000401468 1269 ntTSL 1 (best) BASIC10.26□□□□□ -0.778e-6■■□□□ 13.6
XRCC6P12956 SNX5-211ENST00000483485 3087 ntTSL 29.15□□□□□ -0.952e-10■■□□□ 13.6
XRCC6P12956 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.118e-6■■□□□ 13.6
XRCC6P12956 VPS53-219ENST00000576019 613 ntTSL 36.17□□□□□ -1.428e-6■■□□□ 13.6
XRCC6P12956 SNX5-207ENST00000474883 695 ntTSL 54.88□□□□□ -1.632e-10■■□□□ 13.6
XRCC6P12956 DDX17-203ENST00000403230 2322 ntAPPRIS ALT2 TSL 1 (best)20.58■□□□□ 0.881e-8■■□□□ 13.5
XRCC6P12956 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.331e-8■■□□□ 13.5
XRCC6P12956 DDX17-201ENST00000216019 6441 ntTSL 1 (best)14.71□□□□□ -0.051e-8■■□□□ 13.5
XRCC6P12956 DDX17-205ENST00000432525 1354 ntTSL 211.95□□□□□ -0.51e-8■■□□□ 13.5
XRCC6P12956 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.023e-46■■□□□ 13.5
XRCC6P12956 SNORD48-201ENST00000364953 64 ntBASIC2.23□□□□□ -2.053e-46■■□□□ 13.5
XRCC6P12956 SNORD50B-201ENST00000364995 70 ntBASIC1.97□□□□□ -2.093e-19■■□□□ 13.4
XRCC6P12956 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.115e-6■■□□□ 13.4
XRCC6P12956 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC21.04■□□□□ 0.965e-6■■□□□ 13.4
XRCC6P12956 COQ8A-205ENST00000478406 3612 ntTSL 217.93■□□□□ 0.465e-6■■□□□ 13.4
XRCC6P12956 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.275e-6■■□□□ 13.4
XRCC6P12956 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.375e-7■■□□□ 13.4
XRCC6P12956 HLF-202ENST00000430986 1385 ntTSL 2 BASIC14.52□□□□□ -0.085e-7■■□□□ 13.4
XRCC6P12956 HLF-204ENST00000572002 1251 ntTSL 314.15□□□□□ -0.145e-7■■□□□ 13.4
XRCC6P12956 HLF-207ENST00000573422 493 ntTSL 412.72□□□□□ -0.375e-7■■□□□ 13.4
XRCC6P12956 HLF-203ENST00000570962 1310 ntTSL 212.54□□□□□ -0.45e-7■■□□□ 13.4
XRCC6P12956 GTF2IP7-201ENST00000434037 2399 ntTSL 1 (best) BASIC11.7□□□□□ -0.545e-7■■□□□ 13.4
XRCC6P12956 HLF-208ENST00000573945 2977 ntTSL 5 BASIC11.58□□□□□ -0.555e-7■■□□□ 13.4
XRCC6P12956 HLF-206ENST00000573020 414 ntTSL 410.01□□□□□ -0.815e-7■■□□□ 13.4
XRCC6P12956 HLF-210ENST00000575345 3589 ntTSL 2 BASIC9.73□□□□□ -0.855e-7■■□□□ 13.4
XRCC6P12956 HLF-211ENST00000575868 558 ntTSL 45.06□□□□□ -1.65e-7■■□□□ 13.4
XRCC6P12956 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.577e-8■■□□□ 13.3
XRCC6P12956 THOC6-210ENST00000576143 960 ntTSL 324.79■■□□□ 1.567e-8■■□□□ 13.3
XRCC6P12956 THOC6-205ENST00000573704 991 ntTSL 524.79■■□□□ 1.567e-8■■□□□ 13.3
XRCC6P12956 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.417e-8■■□□□ 13.3
XRCC6P12956 THOC6-208ENST00000574957 1143 ntTSL 1 (best)23.27■■□□□ 1.327e-8■■□□□ 13.3
XRCC6P12956 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.237e-8■■□□□ 13.3
XRCC6P12956 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.88■■□□□ 1.097e-8■■□□□ 13.3
XRCC6P12956 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.845e-6■■□□□ 13.3
XRCC6P12956 THOC6-206ENST00000574498 788 ntTSL 320.06■□□□□ 0.87e-8■■□□□ 13.3
XRCC6P12956 THOC6-204ENST00000571057 988 ntTSL 1 (best)18.86■□□□□ 0.617e-8■■□□□ 13.3
XRCC6P12956 THOC6-203ENST00000571046 614 ntTSL 218.51■□□□□ 0.557e-8■■□□□ 13.3
XRCC6P12956 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.535e-6■■□□□ 13.3
XRCC6P12956 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.485e-6■■□□□ 13.3
XRCC6P12956 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.345e-6■■□□□ 13.3
XRCC6P12956 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.43■□□□□ 0.227e-8■■□□□ 13.3
XRCC6P12956 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.81■□□□□ 0.127e-8■■□□□ 13.3
XRCC6P12956 MAN2A2-203ENST00000557990 956 ntTSL 514.73□□□□□ -0.054e-6■■□□□ 13.3
XRCC6P12956 SCLT1-201ENST00000281142 3055 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.095e-6■■□□□ 13.3
XRCC6P12956 SCLT1-202ENST00000439369 966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.135e-6■■□□□ 13.3
XRCC6P12956 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.167e-8■■□□□ 13.3
XRCC6P12956 EIF3B-208ENST00000466199 734 ntTSL 210.22□□□□□ -0.777e-8■■□□□ 13.3
XRCC6P12956 MAN2A2-219ENST00000560147 492 ntTSL 49.93□□□□□ -0.824e-6■■□□□ 13.3
XRCC6P12956 RANBP10-208ENST00000602887 683 ntTSL 328.8■■■□□ 2.22e-6■■□□□ 13.3
XRCC6P12956 RANBP10-207ENST00000602815 577 ntTSL 428.34■■■□□ 2.132e-6■■□□□ 13.3
XRCC6P12956 RANBP10-205ENST00000602638 1248 ntTSL 228.34■■■□□ 2.132e-6■■□□□ 13.3
XRCC6P12956 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.85■■■□□ 2.052e-6■■□□□ 13.3
XRCC6P12956 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC26.67■■□□□ 1.862e-6■■□□□ 13.3
XRCC6P12956 RANBP10-203ENST00000602506 2756 ntTSL 222.37■■□□□ 1.172e-6■■□□□ 13.3
XRCC6P12956 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.852e-6■■□□□ 13.3
XRCC6P12956 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.852e-6■■□□□ 13.3
XRCC6P12956 RANBP10-204ENST00000602525 1353 ntTSL 212.86□□□□□ -0.352e-6■■□□□ 13.3
XRCC6P12956 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.258e-10■■□□□ 13.3
XRCC6P12956 EHBP1-201ENST00000263991 5165 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.468e-10■■□□□ 13.3
XRCC6P12956 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC9.38□□□□□ -0.913e-6■■□□□ 13.3
XRCC6P12956 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.398e-10■■□□□ 13.3
XRCC6P12956 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.783e-7■■□□□ 13.3
XRCC6P12956 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.313e-7■■□□□ 13.3
XRCC6P12956 RPS5-206ENST00000598807 970 ntTSL 219.08■□□□□ 0.644e-8■■□□□ 13.3
XRCC6P12956 RPS5-208ENST00000599909 523 ntTSL 212.39□□□□□ -0.434e-8■■□□□ 13.3
XRCC6P12956 KIF2C-202ENST00000372224 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.215e-8■■□□□ 13.3
XRCC6P12956 KIF2C-201ENST00000372217 2955 ntTSL 1 (best) BASIC12.45□□□□□ -0.425e-8■■□□□ 13.3
XRCC6P12956 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.87□□□□□ -2.711e-323■■□□□ 13.3
XRCC6P12956 AC087380.1-204ENST00000418729 1026 ntTSL 1 (best)13.71□□□□□ -0.217e-6■■□□□ 13.2
XRCC6P12956 HBE1-202ENST00000380237 913 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.747e-6■■□□□ 13.2
XRCC6P12956 AC087380.1-201ENST00000420465 1001 ntTSL 38.31□□□□□ -1.087e-6■■□□□ 13.2
XRCC6P12956 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC8.1□□□□□ -1.117e-6■■□□□ 13.2
XRCC6P12956 AC087380.1-203ENST00000420726 752 ntTSL 56.76□□□□□ -1.337e-6■■□□□ 13.2
XRCC6P12956 HBE1-203ENST00000396895 578 ntTSL 56.14□□□□□ -1.437e-6■■□□□ 13.2
XRCC6P12956 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.835e-9■■□□□ 13.2
XRCC6P12956 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.735e-9■■□□□ 13.2
Retrieved 100 of 6,788 protein–RNA pairs in 46.9 ms