RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PELP1Q8IZL8 1130 aaKnown RBP12.06□□□□□ -0.48
VPS53-204ENST00000437048 MYT1Q01538 1121 aa12.05□□□□□ -0.48
VPS53-204ENST00000437048 CCER1Q8TC90 406 aaPredicted RBP11.41□□□□□ -0.58
VPS53-204ENST00000437048 EHMT2Q96KQ7 1210 aa11.4□□□□□ -0.59
VPS53-204ENST00000437048 ZEB1P37275 1124 aaPredicted RBP11.28□□□□□ -0.6
VPS53-204ENST00000437048 CENPBP07199 599 aaPredicted RBP11.22□□□□□ -0.61
VPS53-204ENST00000437048 YTHDC1Q96MU7 727 aaKnown RBP11.2□□□□□ -0.62
VPS53-204ENST00000437048 TTBK1Q5TCY1 1321 aaPredicted RBP11.12□□□□□ -0.63
VPS53-204ENST00000437048 DCAF8L2P0C7V8 631 aa11.09□□□□□ -0.63
VPS53-204ENST00000437048 NISCHQ9Y2I1 1504 aa11.06□□□□□ -0.64
VPS53-204ENST00000437048 ERICH6Q7L0X2 663 aa11□□□□□ -0.65
VPS53-204ENST00000437048 APLP2Q06481 763 aa10.91□□□□□ -0.66
VPS53-204ENST00000437048 SUPT5HO00267 1087 aaKnown RBP10.9□□□□□ -0.66
VPS53-204ENST00000437048 FAM9AQ8IZU1 332 aaPredicted RBP10.89□□□□□ -0.67
VPS53-204ENST00000437048 SHROOM4Q9ULL8 1493 aa10.84□□□□□ -0.67
VPS53-204ENST00000437048 NEFLP07196 543 aa10.83□□□□□ -0.68
VPS53-204ENST00000437048 CLSPNQ9HAW4 1339 aa10.62□□□□□ -0.71
VPS53-204ENST00000437048 PPARGC1BQ86YN6 1023 aaKnown RBP10.61□□□□□ -0.71
VPS53-204ENST00000437048 MYT1LQ9UL68 1186 aa10.59□□□□□ -0.71
VPS53-204ENST00000437048 PCGF6Q9BYE7 350 aa10.58□□□□□ -0.72
VPS53-204ENST00000437048 DAXXQ9UER7 740 aaPredicted RBP10.55□□□□□ -0.72
VPS53-204ENST00000437048 RTL5Q5HYW3 569 aaPredicted RBP10.44□□□□□ -0.74
VPS53-204ENST00000437048 TRIM26Q12899 539 aaPredicted RBP10.4□□□□□ -0.74
VPS53-204ENST00000437048 RANGAP1P46060 587 aaPredicted RBP10.39□□□□□ -0.75
VPS53-204ENST00000437048 GLIPR1L2Q4G1C9 344 aa10.39□□□□□ -0.75
VPS53-204ENST00000437048 HRCP23327 699 aa10.35□□□□□ -0.75
VPS53-204ENST00000437048 TRIM41Q8WV44 630 aa10.23□□□□□ -0.77
VPS53-204ENST00000437048 ZNF316A6NFI3 1004 aaPredicted RBP10.21□□□□□ -0.77
VPS53-204ENST00000437048 CNGB1Q14028 1251 aaPredicted RBP10.2□□□□□ -0.78
VPS53-204ENST00000437048 LOC105371045A0A1W2PR82 267 aa10.08□□□□□ -0.8
VPS53-204ENST00000437048 CDK11AQ9UQ88 783 aaPredicted RBP10.07□□□□□ -0.8
VPS53-204ENST00000437048 ANP32BQ92688 251 aaKnown RBP10.05□□□□□ -0.8
VPS53-204ENST00000437048 ACIN1Q9UKV3 1341 aaKnown RBP10.04□□□□□ -0.8
VPS53-204ENST00000437048 UBTFP17480 764 aaKnown RBP10.03□□□□□ -0.8
VPS53-204ENST00000437048 ANP32EQ9BTT0 268 aa10.03□□□□□ -0.8
VPS53-204ENST00000437048 DIEXFQ68CQ4 756 aaKnown RBP10.03□□□□□ -0.8
VPS53-204ENST00000437048 NEFMP07197 916 aa10.01□□□□□ -0.81
VPS53-204ENST00000437048 ANP32AP39687 249 aaKnown RBP10.01□□□□□ -0.81
VPS53-204ENST00000437048 BCANQ96GW7 911 aa10□□□□□ -0.81
VPS53-204ENST00000437048 EIF5BO60841 1220 aaKnown RBP9.98□□□□□ -0.81
VPS53-204ENST00000437048 ZBTB47Q9UFB7 747 aaPredicted RBP9.9□□□□□ -0.82
VPS53-204ENST00000437048 NCLP19338 710 aaKnown RBP9.89□□□□□ -0.83
VPS53-204ENST00000437048 TNNT2P45379 298 aaPredicted RBP9.89□□□□□ -0.83
VPS53-204ENST00000437048 ARID4BQ4LE39 1312 aaPredicted RBP9.87□□□□□ -0.83
VPS53-204ENST00000437048 DCAF1Q9Y4B6 1507 aa9.86□□□□□ -0.83
VPS53-204ENST00000437048 UPF2Q9HAU5 1272 aaKnown RBP9.86□□□□□ -0.83
VPS53-204ENST00000437048 ANP32CO43423 234 aa9.86□□□□□ -0.83
VPS53-204ENST00000437048 TRIM44Q96DX7 344 aaPredicted RBP9.85□□□□□ -0.83
VPS53-204ENST00000437048 ATP1B4Q9UN42 357 aaPredicted RBP9.81□□□□□ -0.84
VPS53-204ENST00000437048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.79□□□□□ -0.84
VPS53-204ENST00000437048 POLR3GLQ9BT43 218 aa9.79□□□□□ -0.84
VPS53-204ENST00000437048 GTF3C3Q9Y5Q9 886 aa9.78□□□□□ -0.84
VPS53-204ENST00000437048 ITGAEP38570 1179 aa9.77□□□□□ -0.85
VPS53-204ENST00000437048 ERICH6BQ5W0A0 696 aa9.77□□□□□ -0.85
VPS53-204ENST00000437048 NEUROD1Q13562 356 aa9.76□□□□□ -0.85
VPS53-204ENST00000437048 SENP3-EIF4A1A0A087X0R7 540 aa9.73□□□□□ -0.85
VPS53-204ENST00000437048 CHIC1Q5VXU3 224 aa9.73□□□□□ -0.85
VPS53-204ENST00000437048 HNRNPUL2Q1KMD3 747 aaKnown RBP9.73□□□□□ -0.85
VPS53-204ENST00000437048 DDRGK1Q96HY6 314 aa9.72□□□□□ -0.85
VPS53-204ENST00000437048 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.7□□□□□ -0.86
VPS53-204ENST00000437048 CCDC180Q9P1Z9 1646 aa9.69□□□□□ -0.86
VPS53-204ENST00000437048 BCL11AQ9H165 835 aa9.67□□□□□ -0.86
VPS53-204ENST00000437048 BECN1Q14457 450 aa9.66□□□□□ -0.86
VPS53-204ENST00000437048 SCAF1Q9H7N4 1312 aaKnown RBP9.66□□□□□ -0.86
VPS53-204ENST00000437048 PPM1GO15355 546 aaPredicted RBP9.65□□□□□ -0.87
VPS53-204ENST00000437048 HSP90AA1P07900 732 aaKnown RBP9.63□□□□□ -0.87
VPS53-204ENST00000437048 GOLGA6L22H0YM25 854 aa9.63□□□□□ -0.87
VPS53-204ENST00000437048 CANXP27824 592 aaKnown RBP9.62□□□□□ -0.87
VPS53-204ENST00000437048 CFAP44Q96MT7 982 aa9.6□□□□□ -0.87
VPS53-204ENST00000437048 PTMSP20962 102 aa9.6□□□□□ -0.87
VPS53-204ENST00000437048 EEA1Q15075 1411 aa9.57□□□□□ -0.88
VPS53-204ENST00000437048 SLC24A1O60721 1099 aa9.56□□□□□ -0.88
VPS53-204ENST00000437048 NRDCO43847 1150 aa9.55□□□□□ -0.88
VPS53-204ENST00000437048 CHMP4BQ9H444 224 aaKnown RBP9.55□□□□□ -0.88
VPS53-204ENST00000437048 USP35Q9P2H5 1018 aa9.55□□□□□ -0.88
VPS53-204ENST00000437048 CDK11BP21127 795 aaKnown RBP9.53□□□□□ -0.88
VPS53-204ENST00000437048 L1TD1Q5T7N2 865 aaKnown RBP9.53□□□□□ -0.88
VPS53-204ENST00000437048 TONSLQ96HA7 1378 aa9.51□□□□□ -0.89
VPS53-204ENST00000437048 GOLGA6L6A8MZA4 724 aa9.5□□□□□ -0.89
VPS53-204ENST00000437048 IRX6P78412 446 aaPredicted RBP9.49□□□□□ -0.89
VPS53-204ENST00000437048 CCDC136Q96JN2 1154 aa9.48□□□□□ -0.89
VPS53-204ENST00000437048 CHAF1AQ13111 956 aaPredicted RBP9.47□□□□□ -0.89
VPS53-204ENST00000437048 ARXQ96QS3 562 aa9.46□□□□□ -0.89
VPS53-204ENST00000437048 MYH16Q9H6N6 1097 aa9.45□□□□□ -0.9
VPS53-204ENST00000437048 TIMELESSQ9UNS1 1208 aa9.45□□□□□ -0.9
VPS53-204ENST00000437048 MS4A1P11836 297 aa9.45□□□□□ -0.9
VPS53-204ENST00000437048 RTN4Q9NQC3 1192 aaKnown RBP9.45□□□□□ -0.9
VPS53-204ENST00000437048 NPM2Q86SE8 214 aaKnown RBP9.45□□□□□ -0.9
VPS53-204ENST00000437048 FKBP8Q14318 412 aa9.41□□□□□ -0.9
VPS53-204ENST00000437048 CASC1Q6TDU7 716 aa9.41□□□□□ -0.9
VPS53-204ENST00000437048 FAM50AQ14320 339 aaKnown RBP9.41□□□□□ -0.9
VPS53-204ENST00000437048 ZRSR1Q15695 479 aaKnown RBP9.41□□□□□ -0.9
VPS53-204ENST00000437048 NBR1Q14596 966 aa9.4□□□□□ -0.9
VPS53-204ENST00000437048 ZNF326Q5BKZ1 582 aaKnown RBP9.4□□□□□ -0.9
VPS53-204ENST00000437048 TRIM52Q96A61 297 aa9.39□□□□□ -0.91
VPS53-204ENST00000437048 CDCA8Q53HL2 280 aa9.38□□□□□ -0.91
VPS53-204ENST00000437048 LAS1LQ9Y4W2 734 aaKnown RBP9.37□□□□□ -0.91
VPS53-204ENST00000437048 HAP1P54257 671 aaPredicted RBP9.37□□□□□ -0.91
VPS53-204ENST00000437048 HNRNPUQ00839 825 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS53-204ENST00000437048 HIRIP3Q9BW71 556 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms