Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AP006294.2-201ENST00000641667 209 ntBASIC22.27■■□□□ 1.16
PDGFBP01127 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDGFBP01127 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDGFBP01127 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDGFBP01127 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PDGFBP01127 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.27■■□□□ 1.15
PDGFBP01127 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.27■■□□□ 1.15
PDGFBP01127 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC22.26■■□□□ 1.15
PDGFBP01127 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PDGFBP01127 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PDGFBP01127 AC010141.3-201ENST00000456659 717 ntBASIC22.26■■□□□ 1.15
PDGFBP01127 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC22.26■■□□□ 1.15
PDGFBP01127 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
PDGFBP01127 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.26■■□□□ 1.15
PDGFBP01127 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PDGFBP01127 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFBP01127 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFBP01127 AC004687.1-201ENST00000579003 1625 ntBASIC22.25■■□□□ 1.15
PDGFBP01127 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFBP01127 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFBP01127 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC22.25■■□□□ 1.15
PDGFBP01127 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC22.25■■□□□ 1.15
PDGFBP01127 RARRES2P4-201ENST00000514074 484 ntBASIC22.25■■□□□ 1.15
PDGFBP01127 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PDGFBP01127 MIR4758-201ENST00000577688 71 ntBASIC22.25■■□□□ 1.15
PDGFBP01127 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.25■■□□□ 1.15
PDGFBP01127 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PDGFBP01127 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFBP01127 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFBP01127 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.24■■□□□ 1.15
PDGFBP01127 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.24■■□□□ 1.15
PDGFBP01127 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFBP01127 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFBP01127 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
PDGFBP01127 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PDGFBP01127 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFBP01127 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.23■■□□□ 1.15
PDGFBP01127 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFBP01127 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
PDGFBP01127 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.23■■□□□ 1.15
PDGFBP01127 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFBP01127 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
PDGFBP01127 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.23■■□□□ 1.15
PDGFBP01127 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFBP01127 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PDGFBP01127 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
PDGFBP01127 MIPEPP3-201ENST00000412105 444 ntBASIC22.22■■□□□ 1.15
PDGFBP01127 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.22■■□□□ 1.15
PDGFBP01127 AL158047.1-201ENST00000445918 881 ntBASIC22.22■■□□□ 1.15
PDGFBP01127 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
PDGFBP01127 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC22.22■■□□□ 1.15
PDGFBP01127 AP001160.3-201ENST00000601484 763 ntBASIC22.22■■□□□ 1.15
PDGFBP01127 AC068587.7-201ENST00000641602 218 ntBASIC22.22■■□□□ 1.15
PDGFBP01127 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFBP01127 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PDGFBP01127 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
PDGFBP01127 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PDGFBP01127 AC005224.4-201ENST00000583262 1652 ntBASIC22.21■■□□□ 1.15
PDGFBP01127 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.21■■□□□ 1.15
PDGFBP01127 RPS2P4-201ENST00000476944 856 ntBASIC22.21■■□□□ 1.15
PDGFBP01127 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.21■■□□□ 1.15
PDGFBP01127 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PDGFBP01127 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PDGFBP01127 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.21■■□□□ 1.15
PDGFBP01127 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
PDGFBP01127 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
PDGFBP01127 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
PDGFBP01127 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PDGFBP01127 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC22.2■■□□□ 1.14
PDGFBP01127 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PDGFBP01127 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PDGFBP01127 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PDGFBP01127 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.19■■□□□ 1.14
PDGFBP01127 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC22.19■■□□□ 1.14
PDGFBP01127 PHB2-213ENST00000546111 858 ntTSL 2 BASIC22.19■■□□□ 1.14
PDGFBP01127 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.19■■□□□ 1.14
PDGFBP01127 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFBP01127 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
PDGFBP01127 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.19■■□□□ 1.14
PDGFBP01127 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.19■■□□□ 1.14
PDGFBP01127 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFBP01127 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFBP01127 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
PDGFBP01127 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PDGFBP01127 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFBP01127 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFBP01127 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFBP01127 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFBP01127 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
PDGFBP01127 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
PDGFBP01127 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFBP01127 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
PDGFBP01127 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PDGFBP01127 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.18■■□□□ 1.14
PDGFBP01127 DUSP8P4-201ENST00000399538 1761 ntBASIC22.17■■□□□ 1.14
PDGFBP01127 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
PDGFBP01127 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.17■■□□□ 1.14
PDGFBP01127 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PDGFBP01127 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PDGFBP01127 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms