Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SEMA3DO95025 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 SERBP1P1-201ENST00000396021 1160 ntBASIC20.87■□□□□ 0.93
SEMA3DO95025 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SEMA3DO95025 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.87■□□□□ 0.93
SEMA3DO95025 AC011298.3-201ENST00000615796 283 ntBASIC20.87■□□□□ 0.93
SEMA3DO95025 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SEMA3DO95025 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.86■□□□□ 0.93
SEMA3DO95025 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SEMA3DO95025 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SEMA3DO95025 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SEMA3DO95025 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SEMA3DO95025 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SEMA3DO95025 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SEMA3DO95025 AL136116.3-201ENST00000402907 1138 ntBASIC20.86■□□□□ 0.93
SEMA3DO95025 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.86■□□□□ 0.93
SEMA3DO95025 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.86■□□□□ 0.93
SEMA3DO95025 AC131212.1-201ENST00000613771 668 ntBASIC20.86■□□□□ 0.93
SEMA3DO95025 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.86■□□□□ 0.93
SEMA3DO95025 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SEMA3DO95025 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.86■□□□□ 0.93
SEMA3DO95025 AC139530.1-201ENST00000575312 1977 ntBASIC20.86■□□□□ 0.93
SEMA3DO95025 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SEMA3DO95025 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SEMA3DO95025 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.85■□□□□ 0.93
SEMA3DO95025 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SEMA3DO95025 AC080038.3-201ENST00000623346 1952 ntBASIC20.85■□□□□ 0.93
SEMA3DO95025 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SEMA3DO95025 AC137767.1-201ENST00000602918 1920 ntBASIC20.85■□□□□ 0.93
SEMA3DO95025 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.85■□□□□ 0.93
SEMA3DO95025 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SEMA3DO95025 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SEMA3DO95025 AC136469.2-201ENST00000623944 1028 ntBASIC20.85■□□□□ 0.93
SEMA3DO95025 AC068587.7-201ENST00000641602 218 ntBASIC20.85■□□□□ 0.93
SEMA3DO95025 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SEMA3DO95025 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SEMA3DO95025 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SEMA3DO95025 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SEMA3DO95025 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
SEMA3DO95025 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SEMA3DO95025 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SEMA3DO95025 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SEMA3DO95025 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SEMA3DO95025 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SEMA3DO95025 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.84■□□□□ 0.93
SEMA3DO95025 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.84■□□□□ 0.93
SEMA3DO95025 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SEMA3DO95025 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SEMA3DO95025 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SEMA3DO95025 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SEMA3DO95025 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SEMA3DO95025 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.83■□□□□ 0.93
SEMA3DO95025 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SEMA3DO95025 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SEMA3DO95025 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
SEMA3DO95025 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.83■□□□□ 0.92
SEMA3DO95025 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
SEMA3DO95025 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SEMA3DO95025 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SEMA3DO95025 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.82■□□□□ 0.92
SEMA3DO95025 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.82■□□□□ 0.92
SEMA3DO95025 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SEMA3DO95025 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.82■□□□□ 0.92
SEMA3DO95025 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SEMA3DO95025 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SEMA3DO95025 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SEMA3DO95025 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SEMA3DO95025 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.81■□□□□ 0.92
SEMA3DO95025 AC092053.2-201ENST00000640557 1818 ntBASIC20.81■□□□□ 0.92
SEMA3DO95025 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SEMA3DO95025 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
SEMA3DO95025 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.81■□□□□ 0.92
SEMA3DO95025 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SEMA3DO95025 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SEMA3DO95025 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms