Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PROM1O43490 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.7■□□□□ 0.9
PROM1O43490 AC010525.1-201ENST00000585559 441 ntBASIC20.7■□□□□ 0.9
PROM1O43490 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.7■□□□□ 0.9
PROM1O43490 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 AC135279.3-201ENST00000610945 1311 ntBASIC20.7■□□□□ 0.9
PROM1O43490 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PROM1O43490 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 MIR4767-201ENST00000582827 78 ntBASIC20.69■□□□□ 0.9
PROM1O43490 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PROM1O43490 GUSBP5-202ENST00000510805 1989 ntBASIC20.68■□□□□ 0.9
PROM1O43490 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.68■□□□□ 0.9
PROM1O43490 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.68■□□□□ 0.9
PROM1O43490 CA15P2-201ENST00000611168 834 ntBASIC20.68■□□□□ 0.9
PROM1O43490 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 AL117328.2-201ENST00000624617 1940 ntBASIC20.68■□□□□ 0.9
PROM1O43490 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PROM1O43490 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
PROM1O43490 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PROM1O43490 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PROM1O43490 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PROM1O43490 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PROM1O43490 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PROM1O43490 PBX2P1-201ENST00000493219 1291 ntBASIC20.67■□□□□ 0.9
PROM1O43490 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.67■□□□□ 0.9
PROM1O43490 AC106739.1-201ENST00000617035 715 ntBASIC20.67■□□□□ 0.9
PROM1O43490 AC110285.6-201ENST00000617652 491 ntBASIC20.67■□□□□ 0.9
PROM1O43490 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.67■□□□□ 0.9
PROM1O43490 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PROM1O43490 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PROM1O43490 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.67■□□□□ 0.9
PROM1O43490 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PROM1O43490 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PROM1O43490 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PROM1O43490 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PROM1O43490 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.66■□□□□ 0.9
PROM1O43490 SLC47A1P1-202ENST00000449666 945 ntBASIC20.66■□□□□ 0.9
PROM1O43490 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
PROM1O43490 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.66■□□□□ 0.9
PROM1O43490 AL139246.5-201ENST00000606645 996 ntBASIC20.66■□□□□ 0.9
PROM1O43490 AC068587.7-201ENST00000641602 218 ntBASIC20.66■□□□□ 0.9
PROM1O43490 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.66■□□□□ 0.9
PROM1O43490 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
PROM1O43490 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
PROM1O43490 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PROM1O43490 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
PROM1O43490 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
PROM1O43490 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.65■□□□□ 0.9
PROM1O43490 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PROM1O43490 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PROM1O43490 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PROM1O43490 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PROM1O43490 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PROM1O43490 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
PROM1O43490 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PROM1O43490 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PROM1O43490 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.64■□□□□ 0.89
PROM1O43490 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.64■□□□□ 0.89
PROM1O43490 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.64■□□□□ 0.89
PROM1O43490 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.64■□□□□ 0.89
PROM1O43490 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.64■□□□□ 0.89
PROM1O43490 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PROM1O43490 AC137767.1-201ENST00000602918 1920 ntBASIC20.64■□□□□ 0.89
PROM1O43490 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PROM1O43490 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PROM1O43490 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PROM1O43490 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms