Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN3AQ9NY46 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN3AQ9NY46 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 AC087239.1-201ENST00000622671 572 ntBASIC20.8■□□□□ 0.92
SCN3AQ9NY46 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN3AQ9NY46 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SCN3AQ9NY46 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.78■□□□□ 0.92
SCN3AQ9NY46 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 AC087742.1-201ENST00000575880 1738 ntBASIC20.77■□□□□ 0.92
SCN3AQ9NY46 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN3AQ9NY46 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
SCN3AQ9NY46 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.77■□□□□ 0.91
SCN3AQ9NY46 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SCN3AQ9NY46 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
SCN3AQ9NY46 AP005435.1-201ENST00000529293 1178 ntBASIC20.77■□□□□ 0.91
SCN3AQ9NY46 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.77■□□□□ 0.91
SCN3AQ9NY46 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 TSPY26P-201ENST00000476365 1326 ntBASIC20.76■□□□□ 0.91
SCN3AQ9NY46 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN3AQ9NY46 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.75■□□□□ 0.91
SCN3AQ9NY46 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 AL031602.1-201ENST00000633169 911 ntBASIC20.75■□□□□ 0.91
SCN3AQ9NY46 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN3AQ9NY46 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN3AQ9NY46 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SCN3AQ9NY46 AC091305.1-201ENST00000479476 895 ntBASIC20.74■□□□□ 0.91
SCN3AQ9NY46 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN3AQ9NY46 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN3AQ9NY46 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN3AQ9NY46 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN3AQ9NY46 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms