Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 AC010542.4-201ENST00000563151 1910 ntBASIC21.14■□□□□ 0.98
NDE1Q9NXR1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 LONRF2P2-201ENST00000439212 571 ntBASIC21.13■□□□□ 0.97
NDE1Q9NXR1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 MIR6765-201ENST00000614092 87 ntBASIC21.13■□□□□ 0.97
NDE1Q9NXR1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 RNF165-205ENST00000588679 2904 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 AC144652.1-201ENST00000609974 1624 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 GPX1-201ENST00000419349 1106 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 SPCS2P3-201ENST00000500401 656 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms