Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NDE1Q9NXR1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.14■□□□□ 0.98
NDE1Q9NXR1 AC010542.4-201ENST00000563151 1910 ntBASIC21.14■□□□□ 0.98
NDE1Q9NXR1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
NDE1Q9NXR1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 LONRF2P2-201ENST00000439212 571 ntBASIC21.13■□□□□ 0.97
NDE1Q9NXR1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 MIR6765-201ENST00000614092 87 ntBASIC21.13■□□□□ 0.97
NDE1Q9NXR1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.13■□□□□ 0.97
NDE1Q9NXR1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NDE1Q9NXR1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NDE1Q9NXR1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NDE1Q9NXR1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.09■□□□□ 0.97
NDE1Q9NXR1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 RNF165-205ENST00000588679 2904 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 AC144652.1-201ENST00000609974 1624 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 GPX1-201ENST00000419349 1106 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 SPCS2P3-201ENST00000500401 656 ntBASIC21.08■□□□□ 0.97
NDE1Q9NXR1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NDE1Q9NXR1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NDE1Q9NXR1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms