Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC079630.1-202ENST00000618127 1840 ntBASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 HNRNPLP2-201ENST00000568980 1570 ntBASIC17.49■□□□□ 0.39
CLRN3Q8NCR9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 AC010542.4-201ENST00000563151 1910 ntBASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLRN3Q8NCR9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 MIR762-201ENST00000390236 83 ntBASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLRN3Q8NCR9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLRN3Q8NCR9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CLRN3Q8NCR9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
CLRN3Q8NCR9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 AL359504.2-201ENST00000605506 1601 ntBASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.45■□□□□ 0.38
CLRN3Q8NCR9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 AP006261.1-201ENST00000584783 668 ntBASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLRN3Q8NCR9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms