Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 AC073111.5-205ENST00000641717 521 ntBASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC29.18■■■□□ 2.26
USHBP1Q8N6Y0 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
USHBP1Q8N6Y0 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC29.17■■■□□ 2.26
USHBP1Q8N6Y0 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USHBP1Q8N6Y0 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 AC010141.3-201ENST00000456659 717 ntBASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 TK2-208ENST00000545043 1120 ntTSL 2 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
USHBP1Q8N6Y0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
USHBP1Q8N6Y0 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.15■■■□□ 2.26
USHBP1Q8N6Y0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC29.15■■■□□ 2.26
USHBP1Q8N6Y0 GXYLT1P5-201ENST00000614548 1189 ntBASIC29.15■■■□□ 2.26
USHBP1Q8N6Y0 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
USHBP1Q8N6Y0 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
USHBP1Q8N6Y0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC29.14■■■□□ 2.26
USHBP1Q8N6Y0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC29.14■■■□□ 2.26
USHBP1Q8N6Y0 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USHBP1Q8N6Y0 PREB-202ENST00000406567 1910 ntTSL 5 BASIC29.13■■■□□ 2.25
USHBP1Q8N6Y0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USHBP1Q8N6Y0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USHBP1Q8N6Y0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USHBP1Q8N6Y0 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USHBP1Q8N6Y0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC29.12■■■□□ 2.25
USHBP1Q8N6Y0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
USHBP1Q8N6Y0 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
USHBP1Q8N6Y0 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
USHBP1Q8N6Y0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
USHBP1Q8N6Y0 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29.11■■■□□ 2.25
USHBP1Q8N6Y0 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 AC068587.7-201ENST00000641602 218 ntBASIC29.1■■■□□ 2.25
USHBP1Q8N6Y0 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
USHBP1Q8N6Y0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
USHBP1Q8N6Y0 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
USHBP1Q8N6Y0 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
USHBP1Q8N6Y0 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
USHBP1Q8N6Y0 ASL-203ENST00000380839 1765 ntTSL 5 BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
USHBP1Q8N6Y0 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
USHBP1Q8N6Y0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
USHBP1Q8N6Y0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
USHBP1Q8N6Y0 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC29.07■■■□□ 2.24
USHBP1Q8N6Y0 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC29.07■■■□□ 2.24
USHBP1Q8N6Y0 AC087239.1-201ENST00000622671 572 ntBASIC29.07■■■□□ 2.24
USHBP1Q8N6Y0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 OXCT2P1-201ENST00000447263 1535 ntBASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
USHBP1Q8N6Y0 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC29.05■■■□□ 2.24
USHBP1Q8N6Y0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USHBP1Q8N6Y0 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC29.05■■■□□ 2.24
USHBP1Q8N6Y0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
USHBP1Q8N6Y0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC29.04■■■□□ 2.24
USHBP1Q8N6Y0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC29.04■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms