Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00643Q86TS7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00643Q86TS7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 BX323043.1-201ENST00000641006 1765 ntBASIC13.75□□□□□ -0.21
LINC00643Q86TS7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00643Q86TS7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00643Q86TS7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00643Q86TS7 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms