Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC15.19■□□□□ 0.02
CKS1BP61024 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC15.19■□□□□ 0.02
CKS1BP61024 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 AC233723.2-201ENST00000623798 2106 ntBASIC15.19■□□□□ 0.02
CKS1BP61024 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CKS1BP61024 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CKS1BP61024 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
CKS1BP61024 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC15.19■□□□□ 0.02
CKS1BP61024 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 RPS2P7-201ENST00000447334 885 ntBASIC15.19■□□□□ 0.02
CKS1BP61024 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC15.19■□□□□ 0.02
CKS1BP61024 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC15.19■□□□□ 0.02
CKS1BP61024 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CKS1BP61024 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC15.19■□□□□ 0.02
CKS1BP61024 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC15.19■□□□□ 0.02
CKS1BP61024 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CKS1BP61024 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CKS1BP61024 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC15.18■□□□□ 0.02
CKS1BP61024 GALC-202ENST00000393568 2054 ntTSL 2 BASIC15.18■□□□□ 0.02
CKS1BP61024 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CKS1BP61024 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CKS1BP61024 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC15.18■□□□□ 0.02
CKS1BP61024 AC009831.1-201ENST00000580420 1582 ntBASIC15.18■□□□□ 0.02
CKS1BP61024 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CKS1BP61024 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 AL022069.1-201ENST00000568025 1636 ntBASIC15.17■□□□□ 0.02
CKS1BP61024 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.17■□□□□ 0.02
CKS1BP61024 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC15.17■□□□□ 0.02
CKS1BP61024 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CKS1BP61024 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CKS1BP61024 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CKS1BP61024 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 AC092068.2-201ENST00000590491 1708 ntBASIC15.17■□□□□ 0.02
CKS1BP61024 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC15.17■□□□□ 0.02
CKS1BP61024 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CKS1BP61024 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.16■□□□□ 0.02
CKS1BP61024 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC15.16■□□□□ 0.02
CKS1BP61024 AC127496.7-201ENST00000625110 1798 ntBASIC15.16■□□□□ 0.02
CKS1BP61024 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CKS1BP61024 CD37-213ENST00000598095 1598 ntTSL 2 BASIC15.16■□□□□ 0.02
CKS1BP61024 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC15.16■□□□□ 0.02
CKS1BP61024 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC15.16■□□□□ 0.02
CKS1BP61024 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CKS1BP61024 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CKS1BP61024 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CKS1BP61024 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CKS1BP61024 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC15.15■□□□□ 0.02
CKS1BP61024 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms