Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
FOXA3P55318 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA3P55318 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA3P55318 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA3P55318 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA3P55318 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC16.4■□□□□ 0.22
FOXA3P55318 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
FOXA3P55318 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA3P55318 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA3P55318 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA3P55318 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
FOXA3P55318 AC005229.4-201ENST00000610085 2198 ntBASIC16.4■□□□□ 0.22
FOXA3P55318 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
FOXA3P55318 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.39■□□□□ 0.22
FOXA3P55318 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
FOXA3P55318 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXA3P55318 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC16.39■□□□□ 0.21
FOXA3P55318 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXA3P55318 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.39■□□□□ 0.21
FOXA3P55318 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
FOXA3P55318 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
FOXA3P55318 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
FOXA3P55318 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA3P55318 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA3P55318 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
FOXA3P55318 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
FOXA3P55318 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
FOXA3P55318 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA3P55318 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
FOXA3P55318 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
FOXA3P55318 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA3P55318 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.38■□□□□ 0.21
FOXA3P55318 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
FOXA3P55318 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.38■□□□□ 0.21
FOXA3P55318 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA3P55318 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
FOXA3P55318 AC022413.1-201ENST00000624602 984 ntBASIC16.37■□□□□ 0.21
FOXA3P55318 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA3P55318 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA3P55318 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA3P55318 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA3P55318 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA3P55318 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
FOXA3P55318 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXA3P55318 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA3P55318 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA3P55318 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA3P55318 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
FOXA3P55318 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA3P55318 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
FOXA3P55318 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA3P55318 ABHD17AP4-201ENST00000411545 909 ntBASIC16.35■□□□□ 0.21
FOXA3P55318 HES4-204ENST00000484667 667 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA3P55318 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA3P55318 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA3P55318 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms