Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 MIR939-201ENST00000401314 82 ntBASIC22.54■■□□□ 1.2
NEK3P51956 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.54■■□□□ 1.2
NEK3P51956 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.54■■□□□ 1.2
NEK3P51956 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.54■■□□□ 1.2
NEK3P51956 pRNA.6-201ENST00000610482 90 ntBASIC22.54■■□□□ 1.2
NEK3P51956 pRNA.5-201ENST00000612139 90 ntBASIC22.54■■□□□ 1.2
NEK3P51956 pRNA.11-201ENST00000618423 90 ntBASIC22.54■■□□□ 1.2
NEK3P51956 pRNA.13-201ENST00000619112 90 ntBASIC22.54■■□□□ 1.2
NEK3P51956 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
NEK3P51956 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.53■■□□□ 1.2
NEK3P51956 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.53■■□□□ 1.2
NEK3P51956 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.53■■□□□ 1.2
NEK3P51956 AL136967.2-201ENST00000623968 743 ntBASIC22.53■■□□□ 1.2
NEK3P51956 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NEK3P51956 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NEK3P51956 MIR935-201ENST00000401179 91 ntBASIC22.52■■□□□ 1.2
NEK3P51956 AC091305.1-201ENST00000479476 895 ntBASIC22.52■■□□□ 1.2
NEK3P51956 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.52■■□□□ 1.2
NEK3P51956 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NEK3P51956 AC137767.1-201ENST00000602918 1920 ntBASIC22.52■■□□□ 1.2
NEK3P51956 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
NEK3P51956 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
NEK3P51956 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
NEK3P51956 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
NEK3P51956 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.52■■□□□ 1.19
NEK3P51956 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NEK3P51956 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
NEK3P51956 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NEK3P51956 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NEK3P51956 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
NEK3P51956 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NEK3P51956 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.51■■□□□ 1.19
NEK3P51956 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
NEK3P51956 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
NEK3P51956 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.51■■□□□ 1.19
NEK3P51956 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.51■■□□□ 1.19
NEK3P51956 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NEK3P51956 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NEK3P51956 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
NEK3P51956 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.5■■□□□ 1.19
NEK3P51956 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.5■■□□□ 1.19
NEK3P51956 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.5■■□□□ 1.19
NEK3P51956 AC027682.1-201ENST00000562846 899 ntBASIC22.5■■□□□ 1.19
NEK3P51956 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.5■■□□□ 1.19
NEK3P51956 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.5■■□□□ 1.19
NEK3P51956 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NEK3P51956 FP325331.1-202ENST00000623531 1380 ntBASIC22.5■■□□□ 1.19
NEK3P51956 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
NEK3P51956 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.49■■□□□ 1.19
NEK3P51956 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
NEK3P51956 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
NEK3P51956 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
NEK3P51956 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.49■■□□□ 1.19
NEK3P51956 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NEK3P51956 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.49■■□□□ 1.19
NEK3P51956 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NEK3P51956 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
NEK3P51956 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NEK3P51956 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.48■■□□□ 1.19
NEK3P51956 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
NEK3P51956 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NEK3P51956 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NEK3P51956 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.48■■□□□ 1.19
NEK3P51956 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.48■■□□□ 1.19
NEK3P51956 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.48■■□□□ 1.19
NEK3P51956 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.48■■□□□ 1.19
NEK3P51956 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
NEK3P51956 AC144652.1-201ENST00000609974 1624 ntBASIC22.48■■□□□ 1.19
NEK3P51956 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NEK3P51956 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NEK3P51956 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
NEK3P51956 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
NEK3P51956 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NEK3P51956 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.47■■□□□ 1.19
NEK3P51956 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
NEK3P51956 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms