Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.31■■□□□ 1
HDAC3O15379 DUX4L4-201ENST00000566884 1269 ntBASIC21.31■■□□□ 1
HDAC3O15379 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.31■■□□□ 1
HDAC3O15379 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.31■■□□□ 1
HDAC3O15379 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC3O15379 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC3O15379 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.31■■□□□ 1
HDAC3O15379 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.31■■□□□ 1
HDAC3O15379 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC3O15379 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
HDAC3O15379 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.3■■□□□ 1
HDAC3O15379 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.3■■□□□ 1
HDAC3O15379 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.3■■□□□ 1
HDAC3O15379 TSPY13P-201ENST00000338964 914 ntBASIC21.3■■□□□ 1
HDAC3O15379 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.3■■□□□ 1
HDAC3O15379 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC3O15379 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HDAC3O15379 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HDAC3O15379 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.29■■□□□ 1
HDAC3O15379 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.29■■□□□ 1
HDAC3O15379 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.29■■□□□ 1
HDAC3O15379 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC3O15379 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 MIR6722-201ENST00000617286 78 ntBASIC21.28■■□□□ 1
HDAC3O15379 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.28■■□□□ 1
HDAC3O15379 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.28■■□□□ 1
HDAC3O15379 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.28■■□□□ 1
HDAC3O15379 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.28■■□□□ 1
HDAC3O15379 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.28■■□□□ 1
HDAC3O15379 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.28■■□□□ 1
HDAC3O15379 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDAC3O15379 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
HDAC3O15379 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HDAC3O15379 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.27■■□□□ 1
HDAC3O15379 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HDAC3O15379 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
HDAC3O15379 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HDAC3O15379 AC137630.3-201ENST00000607245 391 ntBASIC21.27■■□□□ 1
HDAC3O15379 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.27■■□□□ 1
HDAC3O15379 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.27■■□□□ 1
HDAC3O15379 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
HDAC3O15379 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDAC3O15379 AC244015.2-201ENST00000616358 1861 ntBASIC21.26■□□□□ 0.99
HDAC3O15379 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HDAC3O15379 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HDAC3O15379 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.26■□□□□ 0.99
HDAC3O15379 CA15P2-201ENST00000611168 834 ntBASIC21.26■□□□□ 0.99
HDAC3O15379 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
HDAC3O15379 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDAC3O15379 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDAC3O15379 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HDAC3O15379 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
HDAC3O15379 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDAC3O15379 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDAC3O15379 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.25■□□□□ 0.99
HDAC3O15379 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.25■□□□□ 0.99
HDAC3O15379 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HDAC3O15379 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HDAC3O15379 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.25■□□□□ 0.99
HDAC3O15379 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
HDAC3O15379 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDAC3O15379 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.25■□□□□ 0.99
HDAC3O15379 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDAC3O15379 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HDAC3O15379 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
HDAC3O15379 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.24■□□□□ 0.99
HDAC3O15379 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.24■□□□□ 0.99
HDAC3O15379 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.24■□□□□ 0.99
HDAC3O15379 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 AC103834.1-201ENST00000520383 144 ntBASIC21.24■□□□□ 0.99
HDAC3O15379 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.24■□□□□ 0.99
HDAC3O15379 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.24■□□□□ 0.99
HDAC3O15379 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.24■□□□□ 0.99
HDAC3O15379 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HDAC3O15379 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms