Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 AC087239.1-201ENST00000622671 572 ntBASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 RASA4CP-201ENST00000424092 1398 ntBASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV41A0A0B4J266 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 AL136967.2-201ENST00000623968 743 ntBASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV41A0A0B4J266 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 AP005435.1-201ENST00000529293 1178 ntBASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 AL031602.1-201ENST00000633169 911 ntBASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV41A0A0B4J266 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 CA15P2-201ENST00000611168 834 ntBASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV41A0A0B4J266 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV41A0A0B4J266 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV41A0A0B4J266 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
TRAV41A0A0B4J266 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV41A0A0B4J266 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV41A0A0B4J266 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 C1orf229-201ENST00000623686 2258 ntBASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV41A0A0B4J266 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV41A0A0B4J266 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms