Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SMUG1P1-201ENST00000590640 811 ntBASIC30.41■■■□□ 2.46
CCDC61Q9Y6R9 AC080038.1-201ENST00000611274 1154 ntBASIC30.41■■■□□ 2.46
CCDC61Q9Y6R9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC30.41■■■□□ 2.46
CCDC61Q9Y6R9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC61Q9Y6R9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.41■■■□□ 2.46
CCDC61Q9Y6R9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 RAP2CP1-201ENST00000605103 478 ntBASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC30.4■■■□□ 2.46
CCDC61Q9Y6R9 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC61Q9Y6R9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC61Q9Y6R9 COX20-201ENST00000366528 568 ntTSL 2 BASIC30.39■■■□□ 2.46
CCDC61Q9Y6R9 AC010141.3-201ENST00000456659 717 ntBASIC30.39■■■□□ 2.46
CCDC61Q9Y6R9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC30.39■■■□□ 2.46
CCDC61Q9Y6R9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC61Q9Y6R9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.45
CCDC61Q9Y6R9 AC004854.2-201ENST00000608450 1441 ntBASIC30.39■■■□□ 2.45
CCDC61Q9Y6R9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC61Q9Y6R9 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 AL139125.2-201ENST00000623134 1869 ntBASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC61Q9Y6R9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 H19-210ENST00000439725 1929 ntTSL 2 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 AC137761.2-201ENST00000561729 223 ntBASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 AC145350.3-201ENST00000569033 163 ntBASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC61Q9Y6R9 CDCA4P2-201ENST00000441182 718 ntBASIC30.35■■■□□ 2.45
CCDC61Q9Y6R9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC61Q9Y6R9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC61Q9Y6R9 GAS2L1P2-201ENST00000436355 1356 ntBASIC30.35■■■□□ 2.45
CCDC61Q9Y6R9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 DBI-210ENST00000542275 757 ntTSL 5 BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 AC087239.1-201ENST00000622671 572 ntBASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC61Q9Y6R9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 AC016769.1-201ENST00000409132 1010 ntBASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC30.33■■■□□ 2.45
CCDC61Q9Y6R9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC61Q9Y6R9 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC61Q9Y6R9 HLA-L-209ENST00000420110 1011 ntBASIC30.32■■■□□ 2.44
CCDC61Q9Y6R9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC30.32■■■□□ 2.44
CCDC61Q9Y6R9 AC073111.5-205ENST00000641717 521 ntBASIC30.32■■■□□ 2.44
CCDC61Q9Y6R9 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC61Q9Y6R9 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 OXCT2P1-201ENST00000447263 1535 ntBASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC61Q9Y6R9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC61Q9Y6R9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC61Q9Y6R9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC30.3■■■□□ 2.44
CCDC61Q9Y6R9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC30.3■■■□□ 2.44
CCDC61Q9Y6R9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC30.3■■■□□ 2.44
CCDC61Q9Y6R9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.3■■■□□ 2.44
CCDC61Q9Y6R9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC61Q9Y6R9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms