Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CUEDC1Q9NWM3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CUEDC1Q9NWM3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CUEDC1Q9NWM3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 AC010525.1-201ENST00000585559 441 ntBASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CUEDC1Q9NWM3 AC133561.1-201ENST00000568600 2415 ntBASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CUEDC1Q9NWM3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
CUEDC1Q9NWM3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 SUDS3P1-201ENST00000505831 966 ntBASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CUEDC1Q9NWM3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 OR2I1P-207ENST00000453522 948 ntBASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CUEDC1Q9NWM3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 SLC47A1P1-202ENST00000449666 945 ntBASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CUEDC1Q9NWM3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CUEDC1Q9NWM3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.17■□□□□ 0.98
CUEDC1Q9NWM3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.17■□□□□ 0.98
CUEDC1Q9NWM3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.17■□□□□ 0.98
CUEDC1Q9NWM3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CUEDC1Q9NWM3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms