Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CMTM3Q96MX0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
CMTM3Q96MX0 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CMTM3Q96MX0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CMTM3Q96MX0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 AC004448.1-201ENST00000458332 883 ntBASIC18.89■□□□□ 0.61
CMTM3Q96MX0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 AC022616.5-201ENST00000518796 181 ntBASIC18.89■□□□□ 0.61
CMTM3Q96MX0 MIR6765-201ENST00000614092 87 ntBASIC18.89■□□□□ 0.61
CMTM3Q96MX0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CMTM3Q96MX0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 LINC01521-201ENST00000504184 1943 ntBASIC18.88■□□□□ 0.61
CMTM3Q96MX0 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 MIR639-201ENST00000384974 98 ntBASIC18.88■□□□□ 0.61
CMTM3Q96MX0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CMTM3Q96MX0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 SPCS2P3-201ENST00000500401 656 ntBASIC18.87■□□□□ 0.61
CMTM3Q96MX0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CMTM3Q96MX0 LINC01960-201ENST00000563759 1884 ntBASIC18.86■□□□□ 0.61
CMTM3Q96MX0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CMTM3Q96MX0 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.85■□□□□ 0.61
CMTM3Q96MX0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CMTM3Q96MX0 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms