Protein–RNA interactions for Protein: Q7Z7F7

MRPL55, 39S ribosomal protein L55, mitochondrial, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55Q7Z7F7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
MRPL55Q7Z7F7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 ECEL1P1-201ENST00000373592 1742 ntBASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 MIR4787-201ENST00000607364 84 ntBASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 AC242852.2-201ENST00000615738 1807 ntBASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MRPL55Q7Z7F7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 EP400NL-214ENST00000641289 2402 ntBASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 LINC00526-201ENST00000581067 1875 ntBASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 AC127496.7-201ENST00000625110 1798 ntBASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MRPL55Q7Z7F7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 RARRES2P1-201ENST00000474487 481 ntBASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 AC009086.3-201ENST00000623486 1008 ntBASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MRPL55Q7Z7F7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC14.02□□□□□ -0.16
MRPL55Q7Z7F7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MRPL55Q7Z7F7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MRPL55Q7Z7F7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MRPL55Q7Z7F7 CD72-202ENST00000378430 585 ntTSL 3 BASIC14.02□□□□□ -0.17
MRPL55Q7Z7F7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
MRPL55Q7Z7F7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms