Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC29.79■■■□□ 2.36
USP54Q70EL1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USP54Q70EL1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP54Q70EL1 LINC01124-201ENST00000409786 2117 ntBASIC29.78■■■□□ 2.36
USP54Q70EL1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP54Q70EL1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
USP54Q70EL1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP54Q70EL1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC29.78■■■□□ 2.36
USP54Q70EL1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
USP54Q70EL1 BX005040.4-201ENST00000637145 1518 ntBASIC29.78■■■□□ 2.36
USP54Q70EL1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP54Q70EL1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USP54Q70EL1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USP54Q70EL1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC29.77■■■□□ 2.36
USP54Q70EL1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC29.77■■■□□ 2.36
USP54Q70EL1 AC010141.3-201ENST00000456659 717 ntBASIC29.77■■■□□ 2.36
USP54Q70EL1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC29.77■■■□□ 2.36
USP54Q70EL1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC29.77■■■□□ 2.36
USP54Q70EL1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
USP54Q70EL1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC29.77■■■□□ 2.36
USP54Q70EL1 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC29.77■■■□□ 2.36
USP54Q70EL1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.36
USP54Q70EL1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC29.76■■■□□ 2.36
USP54Q70EL1 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USP54Q70EL1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
USP54Q70EL1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
USP54Q70EL1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
USP54Q70EL1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USP54Q70EL1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USP54Q70EL1 AC016769.1-201ENST00000409132 1010 ntBASIC29.76■■■□□ 2.35
USP54Q70EL1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC29.76■■■□□ 2.35
USP54Q70EL1 AC137761.2-201ENST00000561729 223 ntBASIC29.76■■■□□ 2.35
USP54Q70EL1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC29.76■■■□□ 2.35
USP54Q70EL1 AC145350.3-201ENST00000569033 163 ntBASIC29.76■■■□□ 2.35
USP54Q70EL1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.75■■■□□ 2.35
USP54Q70EL1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
USP54Q70EL1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC29.75■■■□□ 2.35
USP54Q70EL1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
USP54Q70EL1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC29.74■■■□□ 2.35
USP54Q70EL1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC29.74■■■□□ 2.35
USP54Q70EL1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC29.74■■■□□ 2.35
USP54Q70EL1 GAS2L1P2-201ENST00000436355 1356 ntBASIC29.74■■■□□ 2.35
USP54Q70EL1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
USP54Q70EL1 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
USP54Q70EL1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC29.74■■■□□ 2.35
USP54Q70EL1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC29.74■■■□□ 2.35
USP54Q70EL1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC29.73■■■□□ 2.35
USP54Q70EL1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC29.73■■■□□ 2.35
USP54Q70EL1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC29.73■■■□□ 2.35
USP54Q70EL1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC29.73■■■□□ 2.35
USP54Q70EL1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC29.72■■■□□ 2.35
USP54Q70EL1 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.72■■■□□ 2.35
USP54Q70EL1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP54Q70EL1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP54Q70EL1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
USP54Q70EL1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC29.72■■■□□ 2.35
USP54Q70EL1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USP54Q70EL1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USP54Q70EL1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC29.71■■■□□ 2.35
USP54Q70EL1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC29.71■■■□□ 2.35
USP54Q70EL1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
USP54Q70EL1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC29.71■■■□□ 2.35
USP54Q70EL1 COX20-201ENST00000366528 568 ntTSL 2 BASIC29.71■■■□□ 2.35
USP54Q70EL1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
USP54Q70EL1 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC29.71■■■□□ 2.35
USP54Q70EL1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
USP54Q70EL1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC29.7■■■□□ 2.35
USP54Q70EL1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC29.7■■■□□ 2.35
USP54Q70EL1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC29.7■■■□□ 2.35
USP54Q70EL1 AL353803.4-201ENST00000565882 1934 ntBASIC29.7■■■□□ 2.34
USP54Q70EL1 HLA-L-209ENST00000420110 1011 ntBASIC29.69■■■□□ 2.34
USP54Q70EL1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC29.69■■■□□ 2.34
USP54Q70EL1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP54Q70EL1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
USP54Q70EL1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
USP54Q70EL1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP54Q70EL1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP54Q70EL1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC29.69■■■□□ 2.34
USP54Q70EL1 CDCA4P2-201ENST00000441182 718 ntBASIC29.69■■■□□ 2.34
USP54Q70EL1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC29.69■■■□□ 2.34
USP54Q70EL1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC29.69■■■□□ 2.34
USP54Q70EL1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP54Q70EL1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC29.69■■■□□ 2.34
USP54Q70EL1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC29.69■■■□□ 2.34
USP54Q70EL1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP54Q70EL1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP54Q70EL1 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
USP54Q70EL1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC29.68■■■□□ 2.34
USP54Q70EL1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP54Q70EL1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC29.67■■■□□ 2.34
USP54Q70EL1 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
USP54Q70EL1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USP54Q70EL1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC29.66■■■□□ 2.34
USP54Q70EL1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC29.66■■■□□ 2.34
USP54Q70EL1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC29.66■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms