Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.5■■□□□ 1.03
SHMT2P34897 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SHMT2P34897 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.5■■□□□ 1.03
SHMT2P34897 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHMT2P34897 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.5■■□□□ 1.03
SHMT2P34897 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.5■■□□□ 1.03
SHMT2P34897 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.5■■□□□ 1.03
SHMT2P34897 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
SHMT2P34897 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.5■■□□□ 1.03
SHMT2P34897 EP400NL-214ENST00000641289 2402 ntBASIC21.5■■□□□ 1.03
SHMT2P34897 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.5■■□□□ 1.03
SHMT2P34897 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.49■■□□□ 1.03
SHMT2P34897 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.49■■□□□ 1.03
SHMT2P34897 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.49■■□□□ 1.03
SHMT2P34897 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
SHMT2P34897 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.49■■□□□ 1.03
SHMT2P34897 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHMT2P34897 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SHMT2P34897 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.49■■□□□ 1.03
SHMT2P34897 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHMT2P34897 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SHMT2P34897 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.48■■□□□ 1.03
SHMT2P34897 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHMT2P34897 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SHMT2P34897 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.48■■□□□ 1.03
SHMT2P34897 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHMT2P34897 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.48■■□□□ 1.03
SHMT2P34897 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHMT2P34897 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.48■■□□□ 1.03
SHMT2P34897 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHMT2P34897 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHMT2P34897 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SHMT2P34897 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHMT2P34897 AC142381.2-201ENST00000566120 298 ntBASIC21.47■■□□□ 1.03
SHMT2P34897 AL031432.3-201ENST00000607698 485 ntBASIC21.47■■□□□ 1.03
SHMT2P34897 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHMT2P34897 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHMT2P34897 LINC00565-201ENST00000562710 2331 ntBASIC21.47■■□□□ 1.03
SHMT2P34897 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHMT2P34897 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHMT2P34897 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.46■■□□□ 1.03
SHMT2P34897 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.46■■□□□ 1.03
SHMT2P34897 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
SHMT2P34897 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.46■■□□□ 1.03
SHMT2P34897 AP001330.3-201ENST00000520123 633 ntBASIC21.46■■□□□ 1.03
SHMT2P34897 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.46■■□□□ 1.03
SHMT2P34897 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.46■■□□□ 1.03
SHMT2P34897 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHMT2P34897 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SHMT2P34897 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SHMT2P34897 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
SHMT2P34897 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SHMT2P34897 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.45■■□□□ 1.02
SHMT2P34897 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 BX842568.3-201ENST00000418104 571 ntBASIC21.45■■□□□ 1.02
SHMT2P34897 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.45■■□□□ 1.02
SHMT2P34897 SUDS3P1-201ENST00000505831 966 ntBASIC21.45■■□□□ 1.02
SHMT2P34897 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SHMT2P34897 AC027682.1-201ENST00000562846 899 ntBASIC21.45■■□□□ 1.02
SHMT2P34897 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHMT2P34897 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHMT2P34897 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHMT2P34897 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.44■■□□□ 1.02
SHMT2P34897 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SHMT2P34897 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.44■■□□□ 1.02
SHMT2P34897 MIR939-201ENST00000401314 82 ntBASIC21.44■■□□□ 1.02
SHMT2P34897 OR2I1P-207ENST00000453522 948 ntBASIC21.44■■□□□ 1.02
SHMT2P34897 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.44■■□□□ 1.02
SHMT2P34897 AF213884.3-201ENST00000563833 479 ntBASIC21.44■■□□□ 1.02
SHMT2P34897 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHMT2P34897 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHMT2P34897 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHMT2P34897 AC233723.2-201ENST00000623798 2106 ntBASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 152.4 ms