Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.1■□□□□ 0.81
MSX1P28360 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.1■□□□□ 0.81
MSX1P28360 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.1■□□□□ 0.81
MSX1P28360 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
MSX1P28360 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX1P28360 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX1P28360 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MSX1P28360 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX1P28360 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
MSX1P28360 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.1■□□□□ 0.81
MSX1P28360 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
MSX1P28360 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX1P28360 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.09■□□□□ 0.81
MSX1P28360 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX1P28360 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX1P28360 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
MSX1P28360 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSX1P28360 OR2I1P-207ENST00000453522 948 ntBASIC20.09■□□□□ 0.81
MSX1P28360 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.09■□□□□ 0.81
MSX1P28360 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX1P28360 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.09■□□□□ 0.81
MSX1P28360 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
MSX1P28360 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.09■□□□□ 0.81
MSX1P28360 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX1P28360 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX1P28360 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSX1P28360 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.08■□□□□ 0.81
MSX1P28360 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSX1P28360 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
MSX1P28360 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.08■□□□□ 0.81
MSX1P28360 AC087623.3-201ENST00000607047 1098 ntBASIC20.08■□□□□ 0.81
MSX1P28360 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSX1P28360 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MSX1P28360 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MSX1P28360 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSX1P28360 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
MSX1P28360 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.07■□□□□ 0.8
MSX1P28360 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MSX1P28360 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSX1P28360 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.07■□□□□ 0.8
MSX1P28360 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.07■□□□□ 0.8
MSX1P28360 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.07■□□□□ 0.8
MSX1P28360 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.07■□□□□ 0.8
MSX1P28360 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.07■□□□□ 0.8
MSX1P28360 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.07■□□□□ 0.8
MSX1P28360 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.06■□□□□ 0.8
MSX1P28360 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSX1P28360 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSX1P28360 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSX1P28360 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
MSX1P28360 AL162430.1-201ENST00000480705 870 ntBASIC20.06■□□□□ 0.8
MSX1P28360 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
MSX1P28360 AC008764.7-201ENST00000593779 1081 ntBASIC20.06■□□□□ 0.8
MSX1P28360 AC068587.7-201ENST00000641602 218 ntBASIC20.06■□□□□ 0.8
MSX1P28360 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.06■□□□□ 0.8
MSX1P28360 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX1P28360 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
MSX1P28360 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 IRS3P-201ENST00000223076 1006 ntBASIC20.05■□□□□ 0.8
MSX1P28360 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.05■□□□□ 0.8
MSX1P28360 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX1P28360 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX1P28360 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX1P28360 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSX1P28360 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.05■□□□□ 0.8
MSX1P28360 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
MSX1P28360 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.05■□□□□ 0.8
MSX1P28360 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MSX1P28360 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
MSX1P28360 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 AC099791.1-201ENST00000416440 715 ntBASIC20.04■□□□□ 0.8
MSX1P28360 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.04■□□□□ 0.8
MSX1P28360 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.04■□□□□ 0.8
MSX1P28360 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.04■□□□□ 0.8
MSX1P28360 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
MSX1P28360 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX1P28360 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
MSX1P28360 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms