Protein–RNA interactions for Protein: P07384

CAPN1, Calpain-1 catalytic subunit, humanhuman

Predictions only

Length 714 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1P07384 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.54■■□□□ 1.04
CAPN1P07384 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.54■■□□□ 1.04
CAPN1P07384 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.54■■□□□ 1.04
CAPN1P07384 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CAPN1P07384 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.54■■□□□ 1.04
CAPN1P07384 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CAPN1P07384 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CAPN1P07384 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.53■■□□□ 1.04
CAPN1P07384 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.53■■□□□ 1.04
CAPN1P07384 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CAPN1P07384 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.53■■□□□ 1.04
CAPN1P07384 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CAPN1P07384 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.53■■□□□ 1.04
CAPN1P07384 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.53■■□□□ 1.04
CAPN1P07384 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CAPN1P07384 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CAPN1P07384 LINC00526-201ENST00000581067 1875 ntBASIC21.53■■□□□ 1.04
CAPN1P07384 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.53■■□□□ 1.04
CAPN1P07384 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CAPN1P07384 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CAPN1P07384 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CAPN1P07384 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CAPN1P07384 ECEL1P1-201ENST00000373592 1742 ntBASIC21.52■■□□□ 1.04
CAPN1P07384 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.52■■□□□ 1.04
CAPN1P07384 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CAPN1P07384 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CAPN1P07384 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.52■■□□□ 1.04
CAPN1P07384 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.52■■□□□ 1.04
CAPN1P07384 AC024257.2-201ENST00000549699 147 ntBASIC21.52■■□□□ 1.04
CAPN1P07384 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.52■■□□□ 1.04
CAPN1P07384 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.52■■□□□ 1.04
CAPN1P07384 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CAPN1P07384 AC135279.3-201ENST00000610945 1311 ntBASIC21.52■■□□□ 1.03
CAPN1P07384 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CAPN1P07384 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CAPN1P07384 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CAPN1P07384 SUDS3P1-201ENST00000505831 966 ntBASIC21.51■■□□□ 1.03
CAPN1P07384 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CAPN1P07384 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.51■■□□□ 1.03
CAPN1P07384 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CAPN1P07384 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CAPN1P07384 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CAPN1P07384 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CAPN1P07384 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.5■■□□□ 1.03
CAPN1P07384 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.5■■□□□ 1.03
CAPN1P07384 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.5■■□□□ 1.03
CAPN1P07384 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
CAPN1P07384 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.5■■□□□ 1.03
CAPN1P07384 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.5■■□□□ 1.03
CAPN1P07384 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.5■■□□□ 1.03
CAPN1P07384 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CAPN1P07384 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 AC009102.2-201ENST00000606772 1639 ntBASIC21.49■■□□□ 1.03
CAPN1P07384 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.49■■□□□ 1.03
CAPN1P07384 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
CAPN1P07384 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.49■■□□□ 1.03
CAPN1P07384 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CAPN1P07384 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CAPN1P07384 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CAPN1P07384 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
CAPN1P07384 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 LINC01529-204ENST00000636474 1715 ntBASIC21.49■■□□□ 1.03
CAPN1P07384 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CAPN1P07384 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.48■■□□□ 1.03
CAPN1P07384 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms