Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.07■□□□□ 0.64
MT-ND4P03905 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
MT-ND4P03905 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
MT-ND4P03905 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
MT-ND4P03905 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MT-ND4P03905 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MT-ND4P03905 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MT-ND4P03905 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.06■□□□□ 0.64
MT-ND4P03905 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.06■□□□□ 0.64
MT-ND4P03905 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
MT-ND4P03905 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
MT-ND4P03905 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
MT-ND4P03905 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
MT-ND4P03905 AC080038.3-201ENST00000623346 1952 ntBASIC19.06■□□□□ 0.64
MT-ND4P03905 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.06■□□□□ 0.64
MT-ND4P03905 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
MT-ND4P03905 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
MT-ND4P03905 KRT18P24-201ENST00000344739 1156 ntBASIC19.05■□□□□ 0.64
MT-ND4P03905 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.05■□□□□ 0.64
MT-ND4P03905 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MT-ND4P03905 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.05■□□□□ 0.64
MT-ND4P03905 AC010980.1-201ENST00000587192 1142 ntBASIC19.05■□□□□ 0.64
MT-ND4P03905 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MT-ND4P03905 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MT-ND4P03905 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
MT-ND4P03905 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
MT-ND4P03905 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.04■□□□□ 0.64
MT-ND4P03905 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.04■□□□□ 0.64
MT-ND4P03905 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.04■□□□□ 0.64
MT-ND4P03905 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
MT-ND4P03905 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MT-ND4P03905 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.04■□□□□ 0.64
MT-ND4P03905 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MT-ND4P03905 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.04■□□□□ 0.64
MT-ND4P03905 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MT-ND4P03905 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MT-ND4P03905 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
MT-ND4P03905 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
MT-ND4P03905 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.03■□□□□ 0.64
MT-ND4P03905 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.03■□□□□ 0.64
MT-ND4P03905 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.03■□□□□ 0.64
MT-ND4P03905 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.03■□□□□ 0.64
MT-ND4P03905 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.03■□□□□ 0.64
MT-ND4P03905 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
MT-ND4P03905 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MT-ND4P03905 AL121603.2-201ENST00000557373 2117 ntBASIC19.03■□□□□ 0.64
MT-ND4P03905 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.03■□□□□ 0.64
MT-ND4P03905 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MT-ND4P03905 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MT-ND4P03905 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.02■□□□□ 0.64
MT-ND4P03905 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MT-ND4P03905 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
MT-ND4P03905 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.02■□□□□ 0.64
MT-ND4P03905 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MT-ND4P03905 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.02■□□□□ 0.64
MT-ND4P03905 AC012354.3-201ENST00000623734 483 ntBASIC19.02■□□□□ 0.64
MT-ND4P03905 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MT-ND4P03905 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MT-ND4P03905 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.02■□□□□ 0.63
MT-ND4P03905 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.02■□□□□ 0.63
MT-ND4P03905 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
MT-ND4P03905 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
MT-ND4P03905 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.02■□□□□ 0.63
MT-ND4P03905 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
MT-ND4P03905 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
MT-ND4P03905 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.01■□□□□ 0.63
MT-ND4P03905 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.01■□□□□ 0.63
MT-ND4P03905 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.01■□□□□ 0.63
MT-ND4P03905 THA1P-201ENST00000590384 1145 ntBASIC19.01■□□□□ 0.63
MT-ND4P03905 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MT-ND4P03905 ALDH1A3-203ENST00000557963 1670 ntBASIC19.01■□□□□ 0.63
MT-ND4P03905 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms