Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC16.5■□□□□ 0.23
HLA-DQA1P01909 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DQA1P01909 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DQA1P01909 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 PFN2-211ENST00000489155 636 ntTSL 4 BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DQA1P01909 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC16.46■□□□□ 0.23
HLA-DQA1P01909 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
HLA-DQA1P01909 RARG-204ENST00000543726 1779 ntTSL 2 BASIC16.46■□□□□ 0.22
HLA-DQA1P01909 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
HLA-DQA1P01909 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HLA-DQA1P01909 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms