Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HMGB3O15347 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB3O15347 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB3O15347 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB3O15347 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HMGB3O15347 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB3O15347 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB3O15347 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB3O15347 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB3O15347 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB3O15347 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HMGB3O15347 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HMGB3O15347 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
HMGB3O15347 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB3O15347 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB3O15347 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB3O15347 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGB3O15347 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGB3O15347 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB3O15347 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB3O15347 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGB3O15347 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
HMGB3O15347 GDI1-215ENST00000630693 786 ntTSL 4 BASIC17.66■□□□□ 0.42
HMGB3O15347 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB3O15347 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HMGB3O15347 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
HMGB3O15347 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGB3O15347 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGB3O15347 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGB3O15347 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HMGB3O15347 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGB3O15347 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGB3O15347 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
HMGB3O15347 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
HMGB3O15347 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
HMGB3O15347 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HMGB3O15347 FBXW4P1-201ENST00000426721 2239 ntBASIC17.64■□□□□ 0.42
HMGB3O15347 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB3O15347 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB3O15347 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC17.64■□□□□ 0.41
HMGB3O15347 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB3O15347 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 AC090340.1-201ENST00000620778 4980 ntBASIC17.64■□□□□ 0.41
HMGB3O15347 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.64■□□□□ 0.41
HMGB3O15347 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HMGB3O15347 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.64■□□□□ 0.41
HMGB3O15347 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HMGB3O15347 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HMGB3O15347 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB3O15347 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB3O15347 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB3O15347 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.63■□□□□ 0.41
HMGB3O15347 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC17.63■□□□□ 0.41
HMGB3O15347 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB3O15347 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.63■□□□□ 0.41
HMGB3O15347 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB3O15347 AL161729.1-201ENST00000604104 1402 ntBASIC17.63■□□□□ 0.41
HMGB3O15347 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB3O15347 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HMGB3O15347 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.62■□□□□ 0.41
HMGB3O15347 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGB3O15347 MIR3648-2-201ENST00000581792 180 ntBASIC17.62■□□□□ 0.41
HMGB3O15347 AC092296.2-201ENST00000589470 999 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms