Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC36.37■■■■□ 3.41
CHD1O14646 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC36.37■■■■□ 3.41
CHD1O14646 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC36.37■■■■□ 3.41
CHD1O14646 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC36.36■■■■□ 3.41
CHD1O14646 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC36.36■■■■□ 3.41
CHD1O14646 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
CHD1O14646 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
CHD1O14646 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC36.36■■■■□ 3.41
CHD1O14646 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
CHD1O14646 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC36.35■■■■□ 3.41
CHD1O14646 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC36.35■■■■□ 3.41
CHD1O14646 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC36.35■■■■□ 3.41
CHD1O14646 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC36.35■■■■□ 3.41
CHD1O14646 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC36.35■■■■□ 3.41
CHD1O14646 ST7-202ENST00000323984 2142 ntTSL 5 BASIC36.34■■■■□ 3.41
CHD1O14646 ST7-207ENST00000393449 2127 ntTSL 5 BASIC36.34■■■■□ 3.41
CHD1O14646 AC105036.2-201ENST00000569468 176 ntBASIC36.34■■■■□ 3.41
CHD1O14646 MARS-234ENST00000630571 216 ntTSL 5 BASIC36.34■■■■□ 3.41
CHD1O14646 MARS-235ENST00000630803 183 ntTSL 3 BASIC36.34■■■■□ 3.41
CHD1O14646 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
CHD1O14646 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC36.34■■■■□ 3.41
CHD1O14646 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC36.34■■■■□ 3.41
CHD1O14646 CASP6-205ENST00000505486 538 ntTSL 4 BASIC36.34■■■■□ 3.41
CHD1O14646 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC36.34■■■■□ 3.41
CHD1O14646 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
CHD1O14646 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC36.33■■■■□ 3.41
CHD1O14646 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC36.33■■■■□ 3.41
CHD1O14646 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC36.33■■■■□ 3.41
CHD1O14646 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
CHD1O14646 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
CHD1O14646 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
CHD1O14646 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC36.32■■■■□ 3.41
CHD1O14646 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
CHD1O14646 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC36.32■■■■□ 3.4
CHD1O14646 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC36.32■■■■□ 3.4
CHD1O14646 BRI3-207ENST00000539286 699 ntTSL 2 BASIC36.32■■■■□ 3.4
CHD1O14646 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC36.32■■■■□ 3.4
CHD1O14646 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC36.32■■■■□ 3.4
CHD1O14646 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC36.31■■■■□ 3.4
CHD1O14646 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 CYP2T1P-201ENST00000432607 1285 ntBASIC36.31■■■■□ 3.4
CHD1O14646 AC083880.1-201ENST00000608266 535 ntBASIC36.31■■■■□ 3.4
CHD1O14646 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC36.31■■■■□ 3.4
CHD1O14646 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC36.31■■■■□ 3.4
CHD1O14646 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC36.31■■■■□ 3.4
CHD1O14646 ADM-205ENST00000528544 586 ntTSL 2 BASIC36.31■■■■□ 3.4
CHD1O14646 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC36.31■■■■□ 3.4
CHD1O14646 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC36.31■■■■□ 3.4
CHD1O14646 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC36.3■■■■□ 3.4
CHD1O14646 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC36.3■■■■□ 3.4
CHD1O14646 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC36.3■■■■□ 3.4
CHD1O14646 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
CHD1O14646 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
CHD1O14646 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
CHD1O14646 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC36.29■■■■□ 3.4
CHD1O14646 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC36.29■■■■□ 3.4
CHD1O14646 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.4
CHD1O14646 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC36.28■■■■□ 3.4
CHD1O14646 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC36.28■■■■□ 3.4
CHD1O14646 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC36.28■■■■□ 3.4
CHD1O14646 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC36.28■■■■□ 3.4
CHD1O14646 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC36.28■■■■□ 3.4
CHD1O14646 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
CHD1O14646 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC36.28■■■■□ 3.4
CHD1O14646 PHB2-213ENST00000546111 858 ntTSL 2 BASIC36.28■■■■□ 3.4
CHD1O14646 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC36.28■■■■□ 3.4
CHD1O14646 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
CHD1O14646 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC36.27■■■■□ 3.4
CHD1O14646 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC36.26■■■■□ 3.4
CHD1O14646 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC36.26■■■■□ 3.4
CHD1O14646 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
CHD1O14646 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC36.26■■■■□ 3.4
CHD1O14646 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC36.26■■■■□ 3.39
CHD1O14646 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC36.26■■■■□ 3.39
CHD1O14646 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC36.25■■■■□ 3.39
CHD1O14646 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC36.25■■■■□ 3.39
CHD1O14646 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC36.25■■■■□ 3.39
CHD1O14646 AP006294.2-201ENST00000641667 209 ntBASIC36.25■■■■□ 3.39
CHD1O14646 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC36.25■■■■□ 3.39
CHD1O14646 AC092803.2-201ENST00000564287 1899 ntBASIC36.25■■■■□ 3.39
CHD1O14646 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
CHD1O14646 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC36.25■■■■□ 3.39
CHD1O14646 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC36.25■■■■□ 3.39
CHD1O14646 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC36.25■■■■□ 3.39
CHD1O14646 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
CHD1O14646 AC144652.1-201ENST00000609974 1624 ntBASIC36.24■■■■□ 3.39
CHD1O14646 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC36.24■■■■□ 3.39
CHD1O14646 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC36.24■■■■□ 3.39
CHD1O14646 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC36.24■■■■□ 3.39
CHD1O14646 PKM-203ENST00000389093 2279 ntTSL 5 BASIC36.23■■■■□ 3.39
CHD1O14646 PPP1R14BP2-201ENST00000426284 444 ntBASIC36.23■■■■□ 3.39
CHD1O14646 IRX5-204ENST00000560154 879 ntTSL 5 BASIC36.23■■■■□ 3.39
CHD1O14646 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC36.23■■■■□ 3.39
CHD1O14646 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC36.23■■■■□ 3.39
CHD1O14646 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC36.23■■■■□ 3.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms