Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 LINC01960-201ENST00000563759 1884 ntBASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 LINC01529-204ENST00000636474 1715 ntBASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
TRAV1-2A0A0B4J238 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV1-2A0A0B4J238 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 FP325331.1-202ENST00000623531 1380 ntBASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 AC129492.7-201ENST00000622992 756 ntBASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.09■□□□□ 0.65
TRAV1-2A0A0B4J238 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV1-2A0A0B4J238 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 MIR4281-201ENST00000580852 62 ntBASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV1-2A0A0B4J238 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 KRT18P24-201ENST00000344739 1156 ntBASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms