Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO4Q9NRQ5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO4Q9NRQ5 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO4Q9NRQ5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.38■□□□□ 0.37
SMCO4Q9NRQ5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SMCO4Q9NRQ5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO4Q9NRQ5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 AC110285.7-201ENST00000624417 1536 ntBASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.37■□□□□ 0.37
SMCO4Q9NRQ5 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 EI24-212ENST00000615917 1407 ntTSL 2 BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO4Q9NRQ5 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.35■□□□□ 0.37
SMCO4Q9NRQ5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 AC010542.4-201ENST00000563151 1910 ntBASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO4Q9NRQ5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMCO4Q9NRQ5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.33■□□□□ 0.37
SMCO4Q9NRQ5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
SMCO4Q9NRQ5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
SMCO4Q9NRQ5 AC079630.1-202ENST00000618127 1840 ntBASIC17.33■□□□□ 0.37
SMCO4Q9NRQ5 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO4Q9NRQ5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SMCO4Q9NRQ5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.31■□□□□ 0.36
SMCO4Q9NRQ5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMCO4Q9NRQ5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMCO4Q9NRQ5 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMCO4Q9NRQ5 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.31■□□□□ 0.36
SMCO4Q9NRQ5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms