Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
COL12A1Q99715 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL12A1Q99715 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL12A1Q99715 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL12A1Q99715 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.57■□□□□ 0.72
COL12A1Q99715 AC105233.4-201ENST00000642045 216 ntBASIC19.57■□□□□ 0.72
COL12A1Q99715 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.57■□□□□ 0.72
COL12A1Q99715 UNC93B4-201ENST00000505679 747 ntBASIC19.57■□□□□ 0.72
COL12A1Q99715 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.57■□□□□ 0.72
COL12A1Q99715 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL12A1Q99715 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL12A1Q99715 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.56■□□□□ 0.72
COL12A1Q99715 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL12A1Q99715 BX005040.4-201ENST00000637145 1518 ntBASIC19.56■□□□□ 0.72
COL12A1Q99715 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL12A1Q99715 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL12A1Q99715 CNN2P6-201ENST00000439038 900 ntBASIC19.56■□□□□ 0.72
COL12A1Q99715 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.56■□□□□ 0.72
COL12A1Q99715 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.55■□□□□ 0.72
COL12A1Q99715 UBE2DNL-204ENST00000602536 740 ntBASIC19.55■□□□□ 0.72
COL12A1Q99715 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL12A1Q99715 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL12A1Q99715 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL12A1Q99715 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL12A1Q99715 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL12A1Q99715 AL445228.2-201ENST00000605589 952 ntBASIC19.55■□□□□ 0.72
COL12A1Q99715 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.55■□□□□ 0.72
COL12A1Q99715 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL12A1Q99715 RNA5SP413-201ENST00000516373 109 ntBASIC19.55■□□□□ 0.72
COL12A1Q99715 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.55■□□□□ 0.72
COL12A1Q99715 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.54■□□□□ 0.72
COL12A1Q99715 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 AC008550.1-201ENST00000511500 884 ntBASIC19.54■□□□□ 0.72
COL12A1Q99715 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
COL12A1Q99715 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.54■□□□□ 0.72
COL12A1Q99715 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.54■□□□□ 0.72
COL12A1Q99715 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
COL12A1Q99715 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL12A1Q99715 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.54■□□□□ 0.72
COL12A1Q99715 OR2I1P-207ENST00000453522 948 ntBASIC19.54■□□□□ 0.72
COL12A1Q99715 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.54■□□□□ 0.72
COL12A1Q99715 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.54■□□□□ 0.72
COL12A1Q99715 AC231657.2-201ENST00000624556 255 ntBASIC19.53■□□□□ 0.72
COL12A1Q99715 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL12A1Q99715 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL12A1Q99715 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL12A1Q99715 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.53■□□□□ 0.72
COL12A1Q99715 AC083880.1-201ENST00000608266 535 ntBASIC19.53■□□□□ 0.72
COL12A1Q99715 AC133041.1-202ENST00000642053 222 ntBASIC19.53■□□□□ 0.72
COL12A1Q99715 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL12A1Q99715 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL12A1Q99715 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL12A1Q99715 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL12A1Q99715 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL12A1Q99715 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL12A1Q99715 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
COL12A1Q99715 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.52■□□□□ 0.71
COL12A1Q99715 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.52■□□□□ 0.71
COL12A1Q99715 AC128676.1-201ENST00000454392 318 ntBASIC19.52■□□□□ 0.71
COL12A1Q99715 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL12A1Q99715 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 AC010525.1-201ENST00000585559 441 ntBASIC19.51■□□□□ 0.71
COL12A1Q99715 AC006058.3-201ENST00000606217 1069 ntBASIC19.51■□□□□ 0.71
COL12A1Q99715 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.51■□□□□ 0.71
COL12A1Q99715 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 AC105036.2-201ENST00000569468 176 ntBASIC19.51■□□□□ 0.71
COL12A1Q99715 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.51■□□□□ 0.71
COL12A1Q99715 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.51■□□□□ 0.71
COL12A1Q99715 AC141586.4-201ENST00000624558 1573 ntBASIC19.51■□□□□ 0.71
COL12A1Q99715 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL12A1Q99715 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.51■□□□□ 0.71
COL12A1Q99715 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL12A1Q99715 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.5■□□□□ 0.71
COL12A1Q99715 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.5■□□□□ 0.71
COL12A1Q99715 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.5■□□□□ 0.71
COL12A1Q99715 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.5■□□□□ 0.71
COL12A1Q99715 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.5■□□□□ 0.71
COL12A1Q99715 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
COL12A1Q99715 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL12A1Q99715 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
COL12A1Q99715 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL12A1Q99715 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms