Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 SERBP1P1-201ENST00000396021 1160 ntBASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHROOM3Q8TF72 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 AL499627.2-201ENST00000606283 725 ntBASIC22.58■■□□□ 1.2
SHROOM3Q8TF72 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 AC135279.3-201ENST00000610945 1311 ntBASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHROOM3Q8TF72 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 AC133637.1-201ENST00000624115 1537 ntBASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SHROOM3Q8TF72 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHROOM3Q8TF72 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 AC011298.3-201ENST00000615796 283 ntBASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
SHROOM3Q8TF72 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 MIR5787-201ENST00000611784 55 ntBASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 SYT6-210ENST00000641643 1587 ntBASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHROOM3Q8TF72 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 AC127496.7-201ENST00000625110 1798 ntBASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHROOM3Q8TF72 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.52■■□□□ 1.19
SHROOM3Q8TF72 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 SRD5A1P1-201ENST00000442297 786 ntBASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 pRNA.6-201ENST00000610482 90 ntBASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 pRNA.5-201ENST00000612139 90 ntBASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 pRNA.11-201ENST00000618423 90 ntBASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 pRNA.13-201ENST00000619112 90 ntBASIC22.51■■□□□ 1.19
SHROOM3Q8TF72 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms