Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
VRK3Q8IV63 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
VRK3Q8IV63 AC110285.6-201ENST00000617652 491 ntBASIC21.63■■□□□ 1.05
VRK3Q8IV63 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.62■■□□□ 1.05
VRK3Q8IV63 AC024257.2-201ENST00000549699 147 ntBASIC21.62■■□□□ 1.05
VRK3Q8IV63 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.62■■□□□ 1.05
VRK3Q8IV63 AL138724.1-201ENST00000606771 1088 ntBASIC21.62■■□□□ 1.05
VRK3Q8IV63 AL136162.1-201ENST00000607711 1078 ntBASIC21.62■■□□□ 1.05
VRK3Q8IV63 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.62■■□□□ 1.05
VRK3Q8IV63 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VRK3Q8IV63 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.62■■□□□ 1.05
VRK3Q8IV63 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VRK3Q8IV63 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.62■■□□□ 1.05
VRK3Q8IV63 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.61■■□□□ 1.05
VRK3Q8IV63 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 AC011298.3-201ENST00000615796 283 ntBASIC21.61■■□□□ 1.05
VRK3Q8IV63 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.61■■□□□ 1.05
VRK3Q8IV63 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
VRK3Q8IV63 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.61■■□□□ 1.05
VRK3Q8IV63 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VRK3Q8IV63 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VRK3Q8IV63 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VRK3Q8IV63 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.6■■□□□ 1.05
VRK3Q8IV63 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VRK3Q8IV63 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VRK3Q8IV63 AC136469.2-201ENST00000623944 1028 ntBASIC21.6■■□□□ 1.05
VRK3Q8IV63 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
VRK3Q8IV63 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VRK3Q8IV63 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.6■■□□□ 1.05
VRK3Q8IV63 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
VRK3Q8IV63 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VRK3Q8IV63 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VRK3Q8IV63 AC135279.3-201ENST00000610945 1311 ntBASIC21.58■■□□□ 1.05
VRK3Q8IV63 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VRK3Q8IV63 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VRK3Q8IV63 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VRK3Q8IV63 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
VRK3Q8IV63 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.58■■□□□ 1.05
VRK3Q8IV63 MIR4767-201ENST00000582827 78 ntBASIC21.58■■□□□ 1.05
VRK3Q8IV63 AC010525.1-201ENST00000585559 441 ntBASIC21.58■■□□□ 1.05
VRK3Q8IV63 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.58■■□□□ 1.05
VRK3Q8IV63 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
VRK3Q8IV63 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VRK3Q8IV63 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VRK3Q8IV63 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
VRK3Q8IV63 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
VRK3Q8IV63 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.57■■□□□ 1.04
VRK3Q8IV63 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VRK3Q8IV63 AC087742.1-201ENST00000575880 1738 ntBASIC21.57■■□□□ 1.04
VRK3Q8IV63 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VRK3Q8IV63 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.57■■□□□ 1.04
VRK3Q8IV63 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
VRK3Q8IV63 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 PBX2P1-201ENST00000493219 1291 ntBASIC21.56■■□□□ 1.04
VRK3Q8IV63 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
VRK3Q8IV63 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 AC012676.1-201ENST00000574705 1949 ntBASIC21.56■■□□□ 1.04
VRK3Q8IV63 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.56■■□□□ 1.04
VRK3Q8IV63 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VRK3Q8IV63 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VRK3Q8IV63 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VRK3Q8IV63 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.55■■□□□ 1.04
VRK3Q8IV63 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms