Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 BX664725.1-201ENST00000438252 379 ntBASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 AC239859.2-201ENST00000444165 318 ntBASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PPP4R4Q6NUP7 AC092053.2-201ENST00000640557 1818 ntBASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 AC139530.1-201ENST00000575312 1977 ntBASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PPP4R4Q6NUP7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 KRT125P-201ENST00000546827 989 ntBASIC21■□□□□ 0.95
PPP4R4Q6NUP7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PPP4R4Q6NUP7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 MIR4281-201ENST00000580852 62 ntBASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 AC011551.1-201ENST00000614101 683 ntBASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PPP4R4Q6NUP7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PPP4R4Q6NUP7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 FBXW4P1-201ENST00000426721 2239 ntBASIC20.97■□□□□ 0.95
PPP4R4Q6NUP7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 AC090877.2-201ENST00000558441 1738 ntBASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms