Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.67■■□□□ 1.54
NKX3-2P78367 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.67■■□□□ 1.54
NKX3-2P78367 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
NKX3-2P78367 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
NKX3-2P78367 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NKX3-2P78367 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NKX3-2P78367 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.66■■□□□ 1.54
NKX3-2P78367 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.66■■□□□ 1.54
NKX3-2P78367 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.66■■□□□ 1.54
NKX3-2P78367 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NKX3-2P78367 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.66■■□□□ 1.54
NKX3-2P78367 WWOX-218ENST00000627394 894 ntTSL 5 BASIC24.66■■□□□ 1.54
NKX3-2P78367 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.66■■□□□ 1.54
NKX3-2P78367 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NKX3-2P78367 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NKX3-2P78367 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.65■■□□□ 1.54
NKX3-2P78367 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX3-2P78367 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX3-2P78367 AC016769.1-201ENST00000409132 1010 ntBASIC24.65■■□□□ 1.54
NKX3-2P78367 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
NKX3-2P78367 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.65■■□□□ 1.54
NKX3-2P78367 SMUG1P1-201ENST00000590640 811 ntBASIC24.65■■□□□ 1.54
NKX3-2P78367 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.65■■□□□ 1.54
NKX3-2P78367 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
NKX3-2P78367 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NKX3-2P78367 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.65■■□□□ 1.54
NKX3-2P78367 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
NKX3-2P78367 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NKX3-2P78367 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.64■■□□□ 1.54
NKX3-2P78367 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.54
NKX3-2P78367 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.64■■□□□ 1.54
NKX3-2P78367 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NKX3-2P78367 AC026185.1-201ENST00000445748 174 ntBASIC24.64■■□□□ 1.54
NKX3-2P78367 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NKX3-2P78367 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
NKX3-2P78367 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.64■■□□□ 1.53
NKX3-2P78367 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.64■■□□□ 1.53
NKX3-2P78367 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NKX3-2P78367 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
NKX3-2P78367 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.63■■□□□ 1.53
NKX3-2P78367 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.63■■□□□ 1.53
NKX3-2P78367 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC24.63■■□□□ 1.53
NKX3-2P78367 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.63■■□□□ 1.53
NKX3-2P78367 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.63■■□□□ 1.53
NKX3-2P78367 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.63■■□□□ 1.53
NKX3-2P78367 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
NKX3-2P78367 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NKX3-2P78367 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NKX3-2P78367 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.62■■□□□ 1.53
NKX3-2P78367 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
NKX3-2P78367 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
NKX3-2P78367 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
NKX3-2P78367 KRT19P1-201ENST00000405746 1186 ntBASIC24.62■■□□□ 1.53
NKX3-2P78367 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.62■■□□□ 1.53
NKX3-2P78367 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.62■■□□□ 1.53
NKX3-2P78367 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.62■■□□□ 1.53
NKX3-2P78367 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC24.62■■□□□ 1.53
NKX3-2P78367 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NKX3-2P78367 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.62■■□□□ 1.53
NKX3-2P78367 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NKX3-2P78367 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
NKX3-2P78367 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
NKX3-2P78367 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
NKX3-2P78367 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX3-2P78367 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX3-2P78367 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
NKX3-2P78367 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
NKX3-2P78367 AC010141.3-201ENST00000456659 717 ntBASIC24.61■■□□□ 1.53
NKX3-2P78367 BID-214ENST00000617586 542 ntTSL 5 BASIC24.61■■□□□ 1.53
NKX3-2P78367 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX3-2P78367 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
NKX3-2P78367 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
NKX3-2P78367 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
NKX3-2P78367 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.6■■□□□ 1.53
NKX3-2P78367 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.6■■□□□ 1.53
NKX3-2P78367 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.6■■□□□ 1.53
NKX3-2P78367 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX3-2P78367 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.6■■□□□ 1.53
NKX3-2P78367 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
NKX3-2P78367 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.59■■□□□ 1.53
NKX3-2P78367 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.59■■□□□ 1.53
NKX3-2P78367 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.59■■□□□ 1.53
NKX3-2P78367 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.59■■□□□ 1.53
NKX3-2P78367 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
NKX3-2P78367 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
NKX3-2P78367 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms