Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.96□□□□□ -0.33
RPS28P62857 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 AC005229.4-201ENST00000610085 2198 ntBASIC12.96□□□□□ -0.33
RPS28P62857 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
RPS28P62857 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC12.96□□□□□ -0.34
RPS28P62857 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 SMG8-203ENST00000578922 2178 ntBASIC12.96□□□□□ -0.34
RPS28P62857 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
RPS28P62857 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RPS28P62857 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC12.95□□□□□ -0.34
RPS28P62857 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RPS28P62857 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RPS28P62857 AC098818.2-201ENST00000564925 2320 ntBASIC12.95□□□□□ -0.34
RPS28P62857 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RPS28P62857 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
RPS28P62857 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC12.95□□□□□ -0.34
RPS28P62857 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
RPS28P62857 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RPS28P62857 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC12.95□□□□□ -0.34
RPS28P62857 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC12.95□□□□□ -0.34
RPS28P62857 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC12.95□□□□□ -0.34
RPS28P62857 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC12.95□□□□□ -0.34
RPS28P62857 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RPS28P62857 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC12.95□□□□□ -0.34
RPS28P62857 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC12.94□□□□□ -0.34
RPS28P62857 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
RPS28P62857 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
RPS28P62857 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
RPS28P62857 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
RPS28P62857 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
RPS28P62857 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
RPS28P62857 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC12.94□□□□□ -0.34
RPS28P62857 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RPS28P62857 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.94□□□□□ -0.34
RPS28P62857 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 AC112907.3-201ENST00000577781 2400 ntBASIC12.93□□□□□ -0.34
RPS28P62857 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC12.93□□□□□ -0.34
RPS28P62857 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC12.93□□□□□ -0.34
RPS28P62857 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
RPS28P62857 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
RPS28P62857 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC12.93□□□□□ -0.34
RPS28P62857 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
RPS28P62857 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RPS28P62857 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
RPS28P62857 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
RPS28P62857 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC12.92□□□□□ -0.34
RPS28P62857 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
RPS28P62857 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
RPS28P62857 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RPS28P62857 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC12.92□□□□□ -0.34
RPS28P62857 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
RPS28P62857 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC12.92□□□□□ -0.34
RPS28P62857 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC12.92□□□□□ -0.34
RPS28P62857 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPS28P62857 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
RPS28P62857 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC12.91□□□□□ -0.34
RPS28P62857 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPS28P62857 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPS28P62857 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPS28P62857 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC12.91□□□□□ -0.34
RPS28P62857 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC12.91□□□□□ -0.34
RPS28P62857 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPS28P62857 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
RPS28P62857 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms