Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.96■□□□□ 0.95
LIM2P55344 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.96■□□□□ 0.95
LIM2P55344 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
LIM2P55344 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
LIM2P55344 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LIM2P55344 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 UNC93B3-201ENST00000308076 687 ntBASIC20.95■□□□□ 0.94
LIM2P55344 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.95■□□□□ 0.94
LIM2P55344 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.95■□□□□ 0.94
LIM2P55344 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIM2P55344 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
LIM2P55344 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIM2P55344 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.94■□□□□ 0.94
LIM2P55344 AC133637.1-201ENST00000624115 1537 ntBASIC20.94■□□□□ 0.94
LIM2P55344 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
LIM2P55344 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIM2P55344 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.94■□□□□ 0.94
LIM2P55344 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 AL138724.1-201ENST00000606771 1088 ntBASIC20.94■□□□□ 0.94
LIM2P55344 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIM2P55344 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
LIM2P55344 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
LIM2P55344 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIM2P55344 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LIM2P55344 AC004687.1-201ENST00000579003 1625 ntBASIC20.93■□□□□ 0.94
LIM2P55344 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.93■□□□□ 0.94
LIM2P55344 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIM2P55344 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIM2P55344 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
LIM2P55344 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIM2P55344 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.93■□□□□ 0.94
LIM2P55344 AC096631.2-201ENST00000436136 790 ntBASIC20.93■□□□□ 0.94
LIM2P55344 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIM2P55344 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.93■□□□□ 0.94
LIM2P55344 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.93■□□□□ 0.94
LIM2P55344 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LIM2P55344 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.93■□□□□ 0.94
LIM2P55344 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIM2P55344 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.92■□□□□ 0.94
LIM2P55344 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.92■□□□□ 0.94
LIM2P55344 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LIM2P55344 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.92■□□□□ 0.94
LIM2P55344 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIM2P55344 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
LIM2P55344 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.92■□□□□ 0.94
LIM2P55344 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.92■□□□□ 0.94
LIM2P55344 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
LIM2P55344 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIM2P55344 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.91■□□□□ 0.94
LIM2P55344 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIM2P55344 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIM2P55344 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIM2P55344 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIM2P55344 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.91■□□□□ 0.94
LIM2P55344 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.91■□□□□ 0.94
LIM2P55344 AC011298.3-201ENST00000615796 283 ntBASIC20.91■□□□□ 0.94
LIM2P55344 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIM2P55344 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
LIM2P55344 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIM2P55344 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.9■□□□□ 0.94
LIM2P55344 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.9■□□□□ 0.94
LIM2P55344 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.9■□□□□ 0.94
LIM2P55344 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.9■□□□□ 0.94
LIM2P55344 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
LIM2P55344 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LIM2P55344 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.9■□□□□ 0.94
LIM2P55344 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIM2P55344 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms