Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 AL356441.2-201ENST00000443009 864 ntBASIC16.77■□□□□ 0.28
HLA-DMBP28068 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HLA-DMBP28068 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.77■□□□□ 0.28
HLA-DMBP28068 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DMBP28068 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC16.77■□□□□ 0.28
HLA-DMBP28068 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DMBP28068 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
HLA-DMBP28068 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DMBP28068 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.77■□□□□ 0.27
HLA-DMBP28068 AC127496.7-201ENST00000625110 1798 ntBASIC16.77■□□□□ 0.27
HLA-DMBP28068 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HLA-DMBP28068 AC021242.3-201ENST00000607598 1377 ntBASIC16.77■□□□□ 0.27
HLA-DMBP28068 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DMBP28068 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HLA-DMBP28068 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 CREM-229ENST00000474362 1030 ntTSL 2 BASIC16.76■□□□□ 0.27
HLA-DMBP28068 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 AC080038.3-201ENST00000623346 1952 ntBASIC16.76■□□□□ 0.27
HLA-DMBP28068 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HLA-DMBP28068 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HLA-DMBP28068 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC16.76■□□□□ 0.27
HLA-DMBP28068 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 AC005703.6-201ENST00000623265 1329 ntBASIC16.75■□□□□ 0.27
HLA-DMBP28068 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DMBP28068 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DMBP28068 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 CLTA-206ENST00000466396 695 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DMBP28068 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DMBP28068 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DMBP28068 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DMBP28068 AC139530.1-201ENST00000575312 1977 ntBASIC16.73■□□□□ 0.27
HLA-DMBP28068 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DMBP28068 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DMBP28068 ASB1-202ENST00000409297 878 ntTSL 5 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 MIR6722-201ENST00000617286 78 ntBASIC16.73■□□□□ 0.27
HLA-DMBP28068 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.73■□□□□ 0.27
HLA-DMBP28068 AC087742.1-201ENST00000575880 1738 ntBASIC16.73■□□□□ 0.27
HLA-DMBP28068 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DMBP28068 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC16.72■□□□□ 0.27
HLA-DMBP28068 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DMBP28068 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DMBP28068 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DMBP28068 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DMBP28068 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.72■□□□□ 0.27
HLA-DMBP28068 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DMBP28068 GRAMD4P7-201ENST00000578182 1232 ntBASIC16.72■□□□□ 0.27
HLA-DMBP28068 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
HLA-DMBP28068 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HLA-DMBP28068 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HLA-DMBP28068 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DMBP28068 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms