Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL8A1P27658 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.36■□□□□ 0.69
COL8A1P27658 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.36■□□□□ 0.69
COL8A1P27658 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL8A1P27658 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL8A1P27658 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.35■□□□□ 0.69
COL8A1P27658 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 SLC29A4P1-201ENST00000398760 971 ntBASIC19.35■□□□□ 0.69
COL8A1P27658 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.35■□□□□ 0.69
COL8A1P27658 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.35■□□□□ 0.69
COL8A1P27658 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.35■□□□□ 0.69
COL8A1P27658 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.35■□□□□ 0.69
COL8A1P27658 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL8A1P27658 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.34■□□□□ 0.69
COL8A1P27658 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.34■□□□□ 0.69
COL8A1P27658 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 POU5F1P3-201ENST00000428824 1078 ntBASIC19.34■□□□□ 0.69
COL8A1P27658 RPS2P52-201ENST00000469610 820 ntBASIC19.34■□□□□ 0.69
COL8A1P27658 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL8A1P27658 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL8A1P27658 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL8A1P27658 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL8A1P27658 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.33■□□□□ 0.69
COL8A1P27658 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL8A1P27658 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL8A1P27658 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.33■□□□□ 0.68
COL8A1P27658 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL8A1P27658 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.33■□□□□ 0.68
COL8A1P27658 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL8A1P27658 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL8A1P27658 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL8A1P27658 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 PRORSD1P-201ENST00000295112 541 ntBASIC19.32■□□□□ 0.68
COL8A1P27658 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.32■□□□□ 0.68
COL8A1P27658 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL8A1P27658 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.32■□□□□ 0.68
COL8A1P27658 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.32■□□□□ 0.68
COL8A1P27658 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.32■□□□□ 0.68
COL8A1P27658 AC098934.4-201ENST00000564127 592 ntBASIC19.32■□□□□ 0.68
COL8A1P27658 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.32■□□□□ 0.68
COL8A1P27658 AC005181.1-201ENST00000604782 1256 ntBASIC19.32■□□□□ 0.68
COL8A1P27658 ITM2C-210ENST00000620962 501 ntBASIC19.32■□□□□ 0.68
COL8A1P27658 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL8A1P27658 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 AC010501.1-201ENST00000606270 1962 ntBASIC19.32■□□□□ 0.68
COL8A1P27658 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL8A1P27658 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL8A1P27658 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL8A1P27658 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.31■□□□□ 0.68
COL8A1P27658 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL8A1P27658 SLC6A10P-202ENST00000431994 2058 ntBASIC19.31■□□□□ 0.68
COL8A1P27658 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL8A1P27658 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL8A1P27658 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.31■□□□□ 0.68
COL8A1P27658 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL8A1P27658 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.31■□□□□ 0.68
COL8A1P27658 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.31■□□□□ 0.68
COL8A1P27658 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL8A1P27658 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL8A1P27658 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL8A1P27658 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.31■□□□□ 0.68
COL8A1P27658 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.3■□□□□ 0.68
COL8A1P27658 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.3■□□□□ 0.68
COL8A1P27658 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL8A1P27658 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.3■□□□□ 0.68
COL8A1P27658 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.3■□□□□ 0.68
COL8A1P27658 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL8A1P27658 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL8A1P27658 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
COL8A1P27658 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.3■□□□□ 0.68
COL8A1P27658 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.29■□□□□ 0.68
COL8A1P27658 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL8A1P27658 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL8A1P27658 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL8A1P27658 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL8A1P27658 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.29■□□□□ 0.68
COL8A1P27658 BX005040.4-201ENST00000637145 1518 ntBASIC19.29■□□□□ 0.68
COL8A1P27658 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL8A1P27658 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL8A1P27658 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms