Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH3P20585 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH3P20585 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.92■■□□□ 1.1
MSH3P20585 AC135279.3-201ENST00000610945 1311 ntBASIC21.92■■□□□ 1.1
MSH3P20585 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.92■■□□□ 1.1
MSH3P20585 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH3P20585 PBX2P1-201ENST00000493219 1291 ntBASIC21.92■■□□□ 1.1
MSH3P20585 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
MSH3P20585 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH3P20585 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
MSH3P20585 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH3P20585 AC079834.2-201ENST00000609776 1949 ntBASIC21.92■■□□□ 1.1
MSH3P20585 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH3P20585 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH3P20585 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH3P20585 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
MSH3P20585 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH3P20585 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MSH3P20585 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH3P20585 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH3P20585 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH3P20585 AC024257.2-201ENST00000549699 147 ntBASIC21.91■■□□□ 1.1
MSH3P20585 AL139246.5-201ENST00000606645 996 ntBASIC21.91■■□□□ 1.1
MSH3P20585 AC110285.6-201ENST00000617652 491 ntBASIC21.91■■□□□ 1.1
MSH3P20585 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH3P20585 AC004687.1-201ENST00000579003 1625 ntBASIC21.91■■□□□ 1.1
MSH3P20585 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH3P20585 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
MSH3P20585 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH3P20585 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH3P20585 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH3P20585 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH3P20585 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
MSH3P20585 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
MSH3P20585 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
MSH3P20585 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH3P20585 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
MSH3P20585 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH3P20585 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH3P20585 C9orf163-202ENST00000624034 2573 ntBASIC21.9■■□□□ 1.1
MSH3P20585 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
MSH3P20585 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH3P20585 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
MSH3P20585 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
MSH3P20585 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.89■■□□□ 1.1
MSH3P20585 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH3P20585 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH3P20585 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MSH3P20585 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH3P20585 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.89■■□□□ 1.09
MSH3P20585 AC136469.2-201ENST00000623944 1028 ntBASIC21.89■■□□□ 1.09
MSH3P20585 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH3P20585 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
MSH3P20585 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH3P20585 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH3P20585 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
MSH3P20585 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH3P20585 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH3P20585 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH3P20585 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH3P20585 AC106739.1-201ENST00000617035 715 ntBASIC21.88■■□□□ 1.09
MSH3P20585 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
MSH3P20585 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH3P20585 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH3P20585 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH3P20585 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH3P20585 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.88■■□□□ 1.09
MSH3P20585 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH3P20585 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.87■■□□□ 1.09
MSH3P20585 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH3P20585 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
MSH3P20585 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH3P20585 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH3P20585 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
MSH3P20585 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH3P20585 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH3P20585 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
MSH3P20585 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH3P20585 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH3P20585 MIR4767-201ENST00000582827 78 ntBASIC21.86■■□□□ 1.09
MSH3P20585 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
MSH3P20585 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms