Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFAP04085 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.58■□□□□ 0.89
PDGFAP04085 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PDGFAP04085 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFAP04085 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFAP04085 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFAP04085 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.58■□□□□ 0.89
PDGFAP04085 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFAP04085 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFAP04085 TERF1P2-201ENST00000583350 1212 ntBASIC20.58■□□□□ 0.89
PDGFAP04085 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
PDGFAP04085 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
PDGFAP04085 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFAP04085 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.57■□□□□ 0.88
PDGFAP04085 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFAP04085 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.57■□□□□ 0.88
PDGFAP04085 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PDGFAP04085 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFAP04085 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFAP04085 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.56■□□□□ 0.88
PDGFAP04085 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.56■□□□□ 0.88
PDGFAP04085 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PDGFAP04085 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.56■□□□□ 0.88
PDGFAP04085 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.56■□□□□ 0.88
PDGFAP04085 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.56■□□□□ 0.88
PDGFAP04085 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.56■□□□□ 0.88
PDGFAP04085 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFAP04085 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.56■□□□□ 0.88
PDGFAP04085 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.55■□□□□ 0.88
PDGFAP04085 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
PDGFAP04085 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.55■□□□□ 0.88
PDGFAP04085 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PDGFAP04085 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.55■□□□□ 0.88
PDGFAP04085 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDGFAP04085 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.54■□□□□ 0.88
PDGFAP04085 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.54■□□□□ 0.88
PDGFAP04085 LINC02228-203ENST00000641970 1355 ntBASIC20.54■□□□□ 0.88
PDGFAP04085 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFAP04085 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDGFAP04085 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 AL499627.2-201ENST00000606283 725 ntBASIC20.53■□□□□ 0.88
PDGFAP04085 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PDGFAP04085 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDGFAP04085 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.53■□□□□ 0.88
PDGFAP04085 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.52■□□□□ 0.88
PDGFAP04085 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.52■□□□□ 0.88
PDGFAP04085 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFAP04085 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFAP04085 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.52■□□□□ 0.88
PDGFAP04085 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.52■□□□□ 0.88
PDGFAP04085 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFAP04085 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFAP04085 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFAP04085 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFAP04085 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PDGFAP04085 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PDGFAP04085 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PDGFAP04085 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFAP04085 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFAP04085 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PDGFAP04085 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFAP04085 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFAP04085 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFAP04085 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFAP04085 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
PDGFAP04085 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PDGFAP04085 HLA-L-209ENST00000420110 1011 ntBASIC20.5■□□□□ 0.87
PDGFAP04085 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.5■□□□□ 0.87
PDGFAP04085 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.5■□□□□ 0.87
PDGFAP04085 OR2I1P-207ENST00000453522 948 ntBASIC20.5■□□□□ 0.87
PDGFAP04085 KRT18P61-201ENST00000585825 1298 ntBASIC20.5■□□□□ 0.87
PDGFAP04085 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms