Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MT-ND4P03905 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.13■□□□□ 0.65
MT-ND4P03905 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.13■□□□□ 0.65
MT-ND4P03905 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
MT-ND4P03905 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MT-ND4P03905 AC074183.2-201ENST00000623112 922 ntBASIC19.13■□□□□ 0.65
MT-ND4P03905 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
MT-ND4P03905 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
MT-ND4P03905 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.13■□□□□ 0.65
MT-ND4P03905 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
MT-ND4P03905 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.13■□□□□ 0.65
MT-ND4P03905 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MT-ND4P03905 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MT-ND4P03905 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.12■□□□□ 0.65
MT-ND4P03905 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
MT-ND4P03905 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.12■□□□□ 0.65
MT-ND4P03905 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
MT-ND4P03905 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.12■□□□□ 0.65
MT-ND4P03905 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.12■□□□□ 0.65
MT-ND4P03905 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.12■□□□□ 0.65
MT-ND4P03905 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
MT-ND4P03905 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.12■□□□□ 0.65
MT-ND4P03905 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
MT-ND4P03905 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.11■□□□□ 0.65
MT-ND4P03905 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.11■□□□□ 0.65
MT-ND4P03905 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MT-ND4P03905 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.11■□□□□ 0.65
MT-ND4P03905 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MT-ND4P03905 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
MT-ND4P03905 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MT-ND4P03905 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.1■□□□□ 0.65
MT-ND4P03905 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MT-ND4P03905 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MT-ND4P03905 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.1■□□□□ 0.65
MT-ND4P03905 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.1■□□□□ 0.65
MT-ND4P03905 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MT-ND4P03905 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MT-ND4P03905 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MT-ND4P03905 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
MT-ND4P03905 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.09■□□□□ 0.65
MT-ND4P03905 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.09■□□□□ 0.65
MT-ND4P03905 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
MT-ND4P03905 TSPY13P-201ENST00000338964 914 ntBASIC19.09■□□□□ 0.65
MT-ND4P03905 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.09■□□□□ 0.65
MT-ND4P03905 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.09■□□□□ 0.65
MT-ND4P03905 PVT1_1.1-201ENST00000615125 194 ntBASIC19.09■□□□□ 0.65
MT-ND4P03905 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
MT-ND4P03905 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
MT-ND4P03905 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.09■□□□□ 0.65
MT-ND4P03905 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
MT-ND4P03905 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.09■□□□□ 0.65
MT-ND4P03905 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.09■□□□□ 0.65
MT-ND4P03905 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MT-ND4P03905 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.08■□□□□ 0.65
MT-ND4P03905 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MT-ND4P03905 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
MT-ND4P03905 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
MT-ND4P03905 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
MT-ND4P03905 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MT-ND4P03905 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
MT-ND4P03905 AC120024.1-201ENST00000562672 995 ntBASIC19.08■□□□□ 0.64
MT-ND4P03905 AC079630.1-202ENST00000618127 1840 ntBASIC19.08■□□□□ 0.64
MT-ND4P03905 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
MT-ND4P03905 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
MT-ND4P03905 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MT-ND4P03905 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
MT-ND4P03905 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
MT-ND4P03905 AC131274.2-201ENST00000580697 1507 ntBASIC19.07■□□□□ 0.64
MT-ND4P03905 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
MT-ND4P03905 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms