Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
CTDNEP1O95476 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.71■■□□□ 1.71
CTDNEP1O95476 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
CTDNEP1O95476 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
CTDNEP1O95476 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.71■■□□□ 1.71
CTDNEP1O95476 LINC00526-201ENST00000581067 1875 ntBASIC25.7■■□□□ 1.71
CTDNEP1O95476 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
CTDNEP1O95476 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC25.7■■□□□ 1.71
CTDNEP1O95476 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CTDNEP1O95476 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.7■■□□□ 1.71
CTDNEP1O95476 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.7■■□□□ 1.7
CTDNEP1O95476 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDNEP1O95476 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDNEP1O95476 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.7■■□□□ 1.7
CTDNEP1O95476 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDNEP1O95476 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.7■■□□□ 1.7
CTDNEP1O95476 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.7■■□□□ 1.7
CTDNEP1O95476 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTDNEP1O95476 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.7■■□□□ 1.7
CTDNEP1O95476 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 AC139530.1-201ENST00000575312 1977 ntBASIC25.69■■□□□ 1.7
CTDNEP1O95476 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 AC099791.2-201ENST00000605725 427 ntBASIC25.69■■□□□ 1.7
CTDNEP1O95476 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.69■■□□□ 1.7
CTDNEP1O95476 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.69■■□□□ 1.7
CTDNEP1O95476 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTDNEP1O95476 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.69■■□□□ 1.7
CTDNEP1O95476 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.69■■□□□ 1.7
CTDNEP1O95476 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CTDNEP1O95476 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.68■■□□□ 1.7
CTDNEP1O95476 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.68■■□□□ 1.7
CTDNEP1O95476 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.68■■□□□ 1.7
CTDNEP1O95476 MIR4466-201ENST00000606121 54 ntBASIC25.68■■□□□ 1.7
CTDNEP1O95476 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDNEP1O95476 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTDNEP1O95476 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
CTDNEP1O95476 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CTDNEP1O95476 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTDNEP1O95476 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTDNEP1O95476 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTDNEP1O95476 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
CTDNEP1O95476 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
CTDNEP1O95476 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CTDNEP1O95476 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CTDNEP1O95476 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
CTDNEP1O95476 AC242852.2-201ENST00000615738 1807 ntBASIC25.66■■□□□ 1.7
CTDNEP1O95476 AC241377.3-202ENST00000626088 1088 ntBASIC25.66■■□□□ 1.7
CTDNEP1O95476 AC241585.3-202ENST00000628937 1088 ntBASIC25.66■■□□□ 1.7
CTDNEP1O95476 AC245100.8-202ENST00000629247 1058 ntBASIC25.66■■□□□ 1.7
CTDNEP1O95476 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CTDNEP1O95476 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CTDNEP1O95476 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CTDNEP1O95476 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CTDNEP1O95476 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTDNEP1O95476 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTDNEP1O95476 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.65■■□□□ 1.7
CTDNEP1O95476 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTDNEP1O95476 LINC01960-201ENST00000563759 1884 ntBASIC25.65■■□□□ 1.7
CTDNEP1O95476 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTDNEP1O95476 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTDNEP1O95476 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC25.65■■□□□ 1.7
CTDNEP1O95476 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.64■■□□□ 1.7
CTDNEP1O95476 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.64■■□□□ 1.7
CTDNEP1O95476 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC25.64■■□□□ 1.7
CTDNEP1O95476 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CTDNEP1O95476 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.64■■□□□ 1.7
CTDNEP1O95476 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.7
CTDNEP1O95476 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
CTDNEP1O95476 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.69
CTDNEP1O95476 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CTDNEP1O95476 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CTDNEP1O95476 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CTDNEP1O95476 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CTDNEP1O95476 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms