Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC003957.1-201ENST00000625108 2673 ntBASIC20.92■□□□□ 0.94
PDLIM1O00151 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PDLIM1O00151 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 FBXW4P1-201ENST00000426721 2239 ntBASIC20.92■□□□□ 0.94
PDLIM1O00151 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.92■□□□□ 0.94
PDLIM1O00151 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM1O00151 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.92■□□□□ 0.94
PDLIM1O00151 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.92■□□□□ 0.94
PDLIM1O00151 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
PDLIM1O00151 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM1O00151 MIR4508-201ENST00000584178 70 ntBASIC20.91■□□□□ 0.94
PDLIM1O00151 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
PDLIM1O00151 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM1O00151 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM1O00151 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM1O00151 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PDLIM1O00151 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM1O00151 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.9■□□□□ 0.94
PDLIM1O00151 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM1O00151 AC092053.2-201ENST00000640557 1818 ntBASIC20.9■□□□□ 0.94
PDLIM1O00151 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
PDLIM1O00151 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PDLIM1O00151 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.89■□□□□ 0.93
PDLIM1O00151 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM1O00151 RARRES2P1-201ENST00000474487 481 ntBASIC20.89■□□□□ 0.93
PDLIM1O00151 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.89■□□□□ 0.93
PDLIM1O00151 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.89■□□□□ 0.93
PDLIM1O00151 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
PDLIM1O00151 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.89■□□□□ 0.93
PDLIM1O00151 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM1O00151 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PDLIM1O00151 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PDLIM1O00151 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.89■□□□□ 0.93
PDLIM1O00151 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM1O00151 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.89■□□□□ 0.93
PDLIM1O00151 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PDLIM1O00151 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.88■□□□□ 0.93
PDLIM1O00151 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PDLIM1O00151 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PDLIM1O00151 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.88■□□□□ 0.93
PDLIM1O00151 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
PDLIM1O00151 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.88■□□□□ 0.93
PDLIM1O00151 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM1O00151 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PDLIM1O00151 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.87■□□□□ 0.93
PDLIM1O00151 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
PDLIM1O00151 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PDLIM1O00151 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.87■□□□□ 0.93
PDLIM1O00151 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.87■□□□□ 0.93
PDLIM1O00151 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.87■□□□□ 0.93
PDLIM1O00151 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM1O00151 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PDLIM1O00151 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.87■□□□□ 0.93
PDLIM1O00151 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.86■□□□□ 0.93
PDLIM1O00151 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.86■□□□□ 0.93
PDLIM1O00151 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
PDLIM1O00151 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM1O00151 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM1O00151 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM1O00151 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM1O00151 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PDLIM1O00151 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PDLIM1O00151 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM1O00151 AC022616.5-201ENST00000518796 181 ntBASIC20.85■□□□□ 0.93
PDLIM1O00151 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms