Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 AL358852.1-201ENST00000623174 1268 ntBASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TMX2-CTNND1H3BSU7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.58■■□□□ 1.05
TMX2-CTNND1H3BSU7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TMX2-CTNND1H3BSU7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.58■■□□□ 1.04
TMX2-CTNND1H3BSU7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.58■■□□□ 1.04
TMX2-CTNND1H3BSU7 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
TMX2-CTNND1H3BSU7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TMX2-CTNND1H3BSU7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 YBX1P1-201ENST00000445822 960 ntBASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TMX2-CTNND1H3BSU7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 TSPY26P-201ENST00000476365 1326 ntBASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 HLA-L-211ENST00000482052 1765 ntBASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TMX2-CTNND1H3BSU7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 LINC00565-201ENST00000562710 2331 ntBASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.55■■□□□ 1.04
TMX2-CTNND1H3BSU7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.54■■□□□ 1.04
TMX2-CTNND1H3BSU7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 EP400NL-214ENST00000641289 2402 ntBASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 AC123595.1-201ENST00000440769 1046 ntBASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 IGHV3-19-201ENST00000521488 291 ntBASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TMX2-CTNND1H3BSU7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TMX2-CTNND1H3BSU7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.52■■□□□ 1.04
TMX2-CTNND1H3BSU7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms